RNA id: XM_021557640.2


Basic Information

Item Value
RNA id XM_021557640.2
length 3255
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC110486208
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29545045 ~ 29553946 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGTCACATCTTGTCCCCTTACCTTTATATATGTCCCATCTATAGGAGAGAGGGtgtgcgcgagagagagagggcgaattTTGGGCATGGGGTGGGATTGAGGGCGATAGGAAGAAAGAAAGTTGTGTCACAATGTGTATTTGATTACTGTTATCAGGGAGAAAAGGTCTCATTGTTGCAGCACTCCTTTTCTTTGCTGACGTAGTGCCTGTTTCCCGTTTACGGAGGGCAACACCCAGCAGCAATGACGAGACCACCCCAGCTACGCTGTCCGCCTACTACTTATGCGTCAGAATCACCAACCAGATTTACACTGAGTCACTCAATAATCAAAGCTCTAAGGAGTACAAACAGCTGAGGAAACAGGTGGAACAGATGATGGATGACGTCCACAGCTCTTTGCCAGAGTCTGACAAATACATGGGTGTATTTGATATAATCTTCAGTAATGGATCAGTCATTGCAAACTCAACATTAATGTTTGGGACTACATTCATGATCATTCCAACTTTAGCTAAAGGTCTACTTTCCATTCATATCCAATCAAATAAATCCAAAACCCTTGACCTGGACCTCGCCTATACTGAAGGTCAACTTCCAATAAAAGCCACACTACCTCTTGTAGCACGTACAACAGCAACCGTAACTTCCTCACCACCATCTACCACAAATACCCCTGCAGCAACGACTACTACAGTTGCCTTAGTTAGTACGGCTAGCCGTTCAGGAAGGGTCGGGGATGGAACTGCATCTACAGCAATGATTTCATCTGGCAACATCACCAGTCTTGCAACAATTAATATTTCAAGTAGTCATACCCTCACAACCACCACAGCACAATTAGCAGCATTACCACTCATATTCCTGAAGAACATAACACTAGAATTAGCAGCATTACCACTCATATTCCTGAAGAACATAACACTACAATTAGCAGCATTACCATTCATATTCCTGAAGAACATATCACTACAATTAGCAGCATTACCACTCATATTCCTGAAGAACATAACACTACAATTAGCAACATTACCACTCATATTCCTGAAGAACATAACACTACAATTAGCAGCATTACCATTCATATTCCTGAAGAACATATCACTACAATTAGCAGCATTACCATTCATATTCCTGAAGAACATAACACTACAATTAGCAACATTACCACTCATATTCCTGAAGAACATATCACTACAATTAGCAACATTACCACTCATATTCCTGAAGAACATAACACTACAATTAGCAACATTACCACTCATATTCCTGAAGAACATAACACTACAATTAGCAACATTACCATTCATATTCCTGAAGAACATATCACTACAATTAGCAACATTACCATTCATATTCCTGAAGAACATATCACTACAATTAGCAACATTACCACTCATATTCCTGAAGACCATAACACTACAATTCGCAACATTACCATTCATATTCCTGAAGAACATAACACTACAATTAGCAACATTACCACTCATATTCCTGAAGAACATATCACTACAATTAGCAACATTACCATTCATATTCCTGAAGAACATAACACTACAATTAGCAACATTACCACTCATATTCCTGAAGAACATAACACTACAATTAGCAACATTACCATTCATATTCCTGAAGAACATAACACTACAATTAGCAACATTACCACTCATATTCCTGAAGAACATATCACTACAATTAGCAGCATTACCACTCATATTCCTGAAGAACATAACACTACAATTAGCAGCATTACCATTCATATTCCTGAAGAACATAACACTACAATTAGCAACATTACCACTCATATTCCTGAAGAACATATCACTACAATTAGCAACATTACCATTCATATTCCTGAAGAACATATCACTACAATTAGCAACATTACCACTCATATTCCTGAAGAACATAACACTACAATTAGCAACATTACCACTCATATTCCTGAAGAACATATCACTACAATTAGCAACATTACCACTCATATTCCTGAAGAACATAACACTACAATTAGCAACATTACCACTCATATTCCTGAAGAACATATCACTACAATTAGCAACATTACCACTCATATTCCTGAAGACCAAAACACTACAATTAGCAACATAACCACCCCTATTCCTGGAGACCATAACATTACAATTAGCAACATAACCACCCCTGCTCCTGGGGACCCTAACATAACAATTAGCAACGTAAGCACCCATATTCCTGGAGACCACAACATTACAATTAGCAACATAACCACCCCTAGTCCTGGGGACCCTAACATAACAATTAGCAACGTAAGCACCCATATTCCTGGAGACCACAACAATACAATTAGCAACACAACCACCCCTGCTCCTGAAGACCACAACATTACAATTAGCAACATAACCATCCCTAGTCCTGGGGACCCTAATATAACAATTAGCAATGTAAGCACCCATATTCCTGGAGACCACAACAATACAATTAGCAACACAACCACCCCTATTACCCCTAAAAATCCTCCCCAGACCAGTAGCACGACAGTCTTCCGTAAAACCTCTCCATCAACAACTGCCTCAGGCCAATCTAACCCCCCAGTTGCCCCTACTGAGAGAGCAACAAGCAGGCATCAGGCTGCCACAGGCCAAACGACCAATCATAAGAACCCAGAGAATACGGAGGCGACACATAAGACCACAGAGAATGCTGCAGCTGTAGTTGCTGGGGGCGGAGAGGGAGTCCCAAGATGGGGGATCGCTCTATTGGTACTGGCTGTCCTGACCTTGTTAATCCTCCTTATTCTCCTAATACTGCTGCTAGTGTGGTTGTGCTGTAGGCAGAGATGTGGAAGTTTCAGCCCATATAACCAGATCAACCACGGGGCAGACATCCAaatgtactccacacacagccgCTTCGACGTGCCCAACGGCAAGCCTAATGACGAAATGCGGGGACCATCGAAAAACCGAACAGGGATGCATGTGGTGAACGAATACTGACACACAGAAGCTCCAGTCAATTGGGTAAGAAGACCATCTGAAATGGCCTTATGAAGTAATATGCATGGGAGCAATGACAATTCTGTACAAATGGTCCAATTATCTCTGAAGTATCTGAATGAAGATCATGGCGTTGGCTCACTGATTGTAATTTCAACCTGtatttattcaaatcaaatcacatttatttataaagccctttttacatcagctgatgtcacaaagtgctatacagaaacccagcctaaaaccccaagcaagcaatgcagatgtccta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150130 lncRNA upstream 22443 29521303 ~ 29522801 (+) False G130265
TU150125 lncRNA upstream 22443 29521577 ~ 29522801 (+) True G130265
TU148934 lncRNA upstream 33111 29511836 ~ 29512133 (+) True G129176
TU148923 lncRNA upstream 47538 29495804 ~ 29497706 (+) True G129165
TU148917 lncRNA upstream 56003 29488953 ~ 29489241 (+) True G129160
TU150155 lncRNA downstream 461 29554407 ~ 29554905 (+) False G130282
TU150156 lncRNA downstream 544 29554490 ~ 29554855 (+) True G130282
TU150172 lncRNA downstream 23715 29577661 ~ 29581410 (+) True G130297
TU150228 lncRNA downstream 110064 29664010 ~ 29671945 (+) True G130345
TU150215 lncRNA downstream 172605 29726551 ~ 29744867 (+) False G130335
XM_036944640.1 mRNA upstream 66843 29424822 ~ 29478401 (+) False LOC110534631
XM_021557438.2 mRNA upstream 126947 29369835 ~ 29418297 (+) False LOC110486083
XM_036944567.1 mRNA upstream 126947 29369835 ~ 29418297 (+) True LOC110486083
XR_005034523.1 mRNA upstream 312523 29231578 ~ 29232721 (+) True LOC118937130
XM_021557405.2 mRNA upstream 348604 29172100 ~ 29196640 (+) False LOC100136336
XR_005039452.1 mRNA downstream 40218 29594164 ~ 29594216 (+) True LOC118944146
LOC118936731 mRNA downstream 100929 29654875 ~ 29662028 (+) True LOC118936731
XM_021557732.2 mRNA downstream 125261 29679207 ~ 29685150 (+) True LOC110486269
XM_021557752.2 mRNA downstream 131909 29685855 ~ 29697686 (+) False LOC110486279
XM_021557744.2 mRNA downstream 131922 29685868 ~ 29697686 (+) False LOC110486279
TU148912 other upstream 60114 29484633 ~ 29485130 (+) True G129155
TU148818 other upstream 67114 29477617 ~ 29478130 (+) True LOC110534631
TU148590 other upstream 563956 28939899 ~ 28981288 (+) True G128853
TU148570 other upstream 600854 28932056 ~ 28944390 (+) True LOC110485990
TU148197 other upstream 997329 28250842 ~ 28547915 (+) True G128490
TU150186 other downstream 46080 29600026 ~ 29641096 (+) True G130308
TU150246 other downstream 132021 29685967 ~ 29693851 (+) True LOC110486279
TU150298 other downstream 235630 29789576 ~ 29789831 (+) True G130414
TU151478 other downstream 1146236 30700182 ~ 30700623 (+) True G131491
TU151514 other downstream 1194109 30748055 ~ 30749954 (+) True G131517

Expression Profile