RNA id: XM_021558527.2


Basic Information

Item Value
RNA id XM_021558527.2
length 1627
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC110486724
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30798780 ~ 30807966 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAACGTCCACTATAAATGACACGGAAATGCACAGTTGTAGCTGCTACATATTGTTCGCTAAATTAGCAAAGTTAACCAATAATTAACTAACTTGAGACAAATACTTTACCTAAAACGAGTGTTCTGTATTTAAAAATACAACAGAAAGCGGAACACAAATTAAATAGGGAGGAAGACTTTTGTTGCGACACAAGGTAAGGGTGAAAGTTGAAGGGTATGTTGTCAACATGGCATCTGGCATTAGTGCAAAGCATGGACTATTAACCACAAAATGTTCGGTATTTCACTCACTCCAAAGAAAGATATTGCCACACGCTATTTGCATTCAACGACCTACAGAAGTGAAATGTCTACGAGCTTCAACAAACTCGACTATAGAGTCGCAGCACAACGAAAAATACTGTATCGACATTGTGAGGTCTCGGGACTATGACGGTTTTGTGTCCTCCCTGCTTCTCCCTGAGGATGCGCGACGCTCCTCACTGGCCCTGAGGGCCTTCAATGTCGAGCTGGCTCAGGTGAAGGACTCTGTTTCCCAGAAGACTATAGGTCTGATGCGGATGCAGTTCTGGAAGACTACAGTGGAGGAGATCTACAGGGACGACCCCCCAGTGCAGCCTGTCAGTGCAGAACTATGGAGGGCGGTGAAGAAACACTACCTGACAAAGAGGTGGATGCTTAGGATAATCTCTGAGAGAGAGAAAGACATGGAAGACAGAGCTTATAGAAACCTCCAGGAGTTGGAGGCCTATTCAGACAATACCCAGTCCTCACTACTGTACCTTCTTCTGGAGAGTTTAGgtgtgaaagatGTCCATGCTGATCATGCTGCCAGCCATATTGGTAAGGCCCAGGGGATCGTGATGTGCCTAAGAGCCACGCCCTACAACAGCAGCAGACGCAAAGTCTACCTACCTATGGACATCTGCATGCTGCACAGAGCCTCCCAGGAGGACTTCATCCGAGGAAGCCGGGAACAGAATGTGAGGGATGTGGTATATGACATTGCCAGCCAAGCCCACGTACACCTACAACACGCCAGATCATTCAGCAAGAACATACCAGCTTCTGCTTTCCCTGCCTTCCTCCAAACGGTGGTGCTGGAAGACTACCTTCAAAGGGTGCGGCGGGTAGACTTTGATGTGTTCCATCCCAGCCTACAGAAAAGAAACCCACTGATCCCCATCCAGCTCTATTTCCGCTCCTGGAAGAAGACCTATTGACCTGTATAGTGGGACCTTATCGTTTGCCCTATTGTAATTTATACCAGGTTTAAACATCCGGTTTCCCAAAGTCCCGCTCTCGTATGTTGGTTTCTAAGTAGACCTATCTACAACAGTGGATTTCAAGAGACTCCTCCATCTATGATGTCAGCACTCCCCAAAAAAAGGATTCTGATCTAAAACATGCCTCTGCCATCTAAACCAGTTCACCTGTGTTATTCCCTGTTGTAGACTAGACAGCTGAGGACCACAGACAGAGATTATTGTAAAGCAATAACTACAGTACTGGAGACTGAACTGATGCCCTGATATATTGAGTATTTTCAGTAATAAATCGTGTAGCCATGTTGGTCTGTGTTTTCTCTCCTTTTTAAAGCTTAAATAAAGATGTCACAACCATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151493 lncRNA upstream 36866 30747628 ~ 30761914 (+) True G131502
TU151481 lncRNA upstream 89059 30709496 ~ 30709721 (+) True G131494
TU151480 lncRNA upstream 89296 30708874 ~ 30709484 (+) True G131493
TU151430 lncRNA upstream 187860 30610691 ~ 30610920 (+) True G131448
TU151406 lncRNA upstream 203343 30595237 ~ 30595437 (+) True G131424
TU151525 lncRNA downstream 6540 30814506 ~ 30815333 (+) True G131527
TU151538 lncRNA downstream 52590 30860556 ~ 30861094 (+) True G131540
TU151557 lncRNA downstream 94838 30902804 ~ 30908231 (+) True G131556
TU151751 lncRNA downstream 248094 31056060 ~ 31056286 (+) True G131719
TU151752 lncRNA downstream 291234 31099200 ~ 31099445 (+) True G131720
XM_036945505.1 mRNA upstream 52629 30618003 ~ 30746151 (+) False si:dkey-22o22.2
XR_005036284.1 mRNA upstream 52629 30618003 ~ 30746151 (+) True si:dkey-22o22.2
XM_021558454.2 mRNA upstream 256207 30532828 ~ 30542573 (+) True LOC110486681
XM_021558391.2 mRNA upstream 268434 30518896 ~ 30530346 (+) False LOC110486625
XR_005036237.1 mRNA upstream 268434 30518896 ~ 30530346 (+) True LOC110486625
XM_036945578.1 mRNA downstream 13810 30821776 ~ 30844299 (+) False plekhf2
XM_021558562.2 mRNA downstream 13906 30821872 ~ 30844299 (+) False plekhf2
XM_036945579.1 mRNA downstream 14485 30822451 ~ 30844299 (+) False plekhf2
XM_036945557.1 mRNA downstream 16455 30824421 ~ 30844299 (+) False plekhf2
XR_005036299.1 mRNA downstream 16455 30824421 ~ 30844299 (+) False plekhf2
TU151514 other upstream 48826 30748055 ~ 30749954 (+) True G131517
TU151478 other upstream 98157 30700182 ~ 30700623 (+) True G131491
TU150298 other upstream 1008949 29789576 ~ 29789831 (+) True G130414
TU150246 other upstream 1104929 29685967 ~ 29693851 (+) True LOC110486279
TU150186 other upstream 1157684 29600026 ~ 29641096 (+) True G130308
TU151868 other downstream 483504 31291470 ~ 31293034 (+) False LOC110534710
TU151908 other downstream 552470 31360436 ~ 31363213 (+) False eaf1
TU151909 other downstream 552470 31360436 ~ 31366322 (+) True eaf1
TU152486 other downstream 1049682 31857648 ~ 31887572 (+) False G132342
TU152482 other downstream 1049720 31857686 ~ 31883073 (+) True G132342

Expression Profile