RNA id: XM_036958500.1


Basic Information

Item Value
RNA id XM_036958500.1
length 6395
RNA type mRNA
GC content 0.47
exon number 15
gene id LOC110499288
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89555573 ~ 89577445 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTATTTCTACATATGAAACCCACGCGCATGCGTACATTCTAAATTACGATTTGCACAACGGTCTATCATCAAAGATGGCGGGAGCCTCCGACCCACTGGAGGACATGCTCTTCAATGAGGTAGACGAAAAAGCTGTAAGCGACTTAGTGGGCTCTTTGGAATCGCAACTTGTCAGCCAAAAGACTTCGCCCGCCACATATTCTAATAGCAAGCGAGAAGGATCTACGGGCGCTGTTAGCCAGTTCTCAGGGAAACTGCGTGATCAAGCGGGGTCTCTGGAGCCGCCACAACAAGGACACCCAAAAGCGGCGTTAAACGCGGAACCCATCGCGAATCAGGCGATGCCCAATAAGATTATCAGCGCTTCCACCTCTTCCATCACTACTGGGGGTGTTTTAAACGCTGGTACTAATCTACAAACATATGGAACCGCATCTCAAACCATTTCCACCGCACCACCAGGATCGGTAACTTTGCCTGCTCTGTCGACTAGCTTCAACAGAGGGACTATTTTGGGTCCTGCTGGCACATCAGCGGTGACTGTTCCCAATCCAAACATCACAACAGCAACAACTATCAGGACTGCTTCACCTGGTTTACAGAGTTTTAACGGGAACACTGGAGCTCTGAAGTTGGTCAACTCGCCTGCAGCTTCCCAAGTCGGGTCAGGCAGCAGCACTGTTGTAAGTACTGTCAGTGCGGGCAATTCCAATATCATTGTGTCCATGACTTCACAACCTCCTTCTCTGCCAAACTTTACTGGACCTCAACAGTCTGCAGTGGCTACTACTCCCACTATTGCATTGCAAAGACAGCCCAGCCCCATGGCCATTGCCTCACAGAATGGAGTAATAGACCCCAAGGTTTCTGCAGTGGTCACACAGGGTGCAGGTTCCCTAGGGGCCACCACCTCTCAGGTCATGAACCACAGCAACACTGTCATGCACACTAAAATGGTGGCACCCAACCAGCCAGTCTCTGCTGGCCAATCAATAATTCTCGGAGGGTCTCCCCCTCCTGTTGTTGTTAACTCACCAATAAGCCAGCCACAGAGTGTGGCGAGTCCCACTCTCACAGCTGGGGTGAAACCAACTGTTAATGGAGTTGGTCAGCCCACAGTGACCATCGTGAGGCCCCCCAGTGCTCCTGTGATGGCTACCCCCGTACAGCAGCAGAGACCTGGGCTGTTAGCAAGTACCACGAGGACTGCTGCACCACAGCTGGCCGTCAGACCACCACAAAAGACCACCATTCAGTTACCCCCTGGATTTACCATACCACCCGGTATGGTGCTGGTGCGTACGGACACGGGACAGCTAGTGATGGTGACTCAGCAGGTTCTAGCCCAGGCCCAGGCTAAGACCcaacaaggccaggctgctgtctcCAACATCTCCCCCCAGCCTGGAATCTCCACCGCTGGGGCCAACGTCAGAGTTAGCACTCCCAGCCAGGCCCCTGGTACGCCCCAGGCTGTCCGTCTGGCGTCCCCTTTCCAGGCAAGAATGGCccagtccccctctccctctagccCTGCTATACAGGCCATAACCGTGGCACCTGCGGGTGCGTCTGTGTCAGTGaaaatgaccacccctcagaaGGCCCAGTCTGTGATCACAGGGGGCCAGGCCTTGGTCAAGCCTGGTGCTGTACGGCCCACTATCACCCTGAACACTGCAGCAGCCAGTGCCTCTGGAAGCCCTATTGCAACAGTCTCCCAGGAAATGCAAGAGAATGTGAAGAAGTGCAAGAACTTCCTGTCCACCCTGATCAAACTGGCGTCCCACAACTCCCCCTCCCCTGACACATCTAAGAACGTCAAGACCCTGGTGCAGGATCTACTGGATGCTAAAATCGAGCCTGAGGAATTCACCACGAGTCTGCAGGCTGAGCTGAAATCCTCTCCACAGCCGTACCTCATCCCCTTCCTCAAGAAAAGCCTCCCTGCCCTGCGGCTGTCCCTTCTCAACAACCAGCAGTCTCTTCTGGCCTCCACCTCCGCTTCTGCCCTGGCcgtcccctccacctccaccatcagGCCCCGGCTCCCCACCACCATCAGCCCCGCCACAGGCATCGTCAGGACACCTACCACTGCCCTGgGTGTGAGAAGACCAGGGGTCCAGGGGGTCCAGACCCGCATGCCCATGGTCATCACTCAGACTATACGACCGCAAGGCGTAGTTACAAGAGGACCCTCTATTATCCCGGGCAGAAGTCCTGTGGGCATTGGTGCCCAGGCCTCTGCCAATCAGAAGAAGCTGAATGAGCCTGGAGGTGGGACGTTCAGAGATGACGATGACATCAATGACGTGGCGTCCATGGCGGGGGTAAACCTGAACGAGGAAAACGCCCGCATCATGGCCACCAACTCTGAGCTGGTGGGCACCAAGATCCGCTCCTGTAAGGACGAGGCCTTCCTCCCCCCAGGCCTGCTGCACAGACGCATCATGGAGGCTGCCAAGAGATTTGGGGTGACCGAGGTCCCAGCTGAGACAGTGAACTACATCTCCCATGCTACCCAGGCCAGGCTGAGATCCATGCTGGAGAAAGTGTCCACTATCGCCCAGCACCGCACCGACGGGGGCAAGGATGAGGAATGGTATGAGCCGTCGACAGACGTCAGGGCCCAGCTCCGCTTTTTTGAGCAGCTGGAAAGGATGGAGAAACAGAGGAAGGacgaacaggagagagaggtccTACTCAAGGCTGCCAAGAGTCGCGCCAGACAGGAGGACCCAGAACAAGCTCGGTTGAAGGCGAAAGCTAAGGAGATGCAGCAGGCGGAGCAGGCCCAGATCCGGCAGCGTGAAGCCAACCTCACTGCCCTGGCTGCCATCGGGCCCCGTAAGAAACGCAAGATGGACTCGCCAGGGGGCTCCACATCGGGCACAGAGGTTGCTTCGGGTTCAGGGGATGGCTCTTCCACAGCTGCCTCCTCCCGCCAACAGCTCCGTCAGCGGATCACGCGAGTCAACCTCAGGGACTTTATCTTCTGCCTGGAGCAGGAGAGGGCCACATCCAGGTCCTTATTGCTTTATAAAGCTCTCCTGAAGTAGTGAAGTCCCCCAGGGTTCAGTACTCAGTTAATTACACATTCTTACTGTTCTACACAGCTCTCCTGAAGTAGTGGGGGTACCACAAGGTTCAGTACTCAGCCCATTACAAATCCTTACGGTTCTTCACAGCTCTCCTGAAGTATGACGTCCTACAGGGTTTAGTACTTAGCCGGCCCGTTACAAATCCATAAGGGTTCTCTAGTCGACCCAATACAAATCTTTACTGTTCTACACAACTCTCCTGAAGTAGGGCGTCCACAATGGTTCTGTACTCGACCTGATGCAAATCCTTACTACTCGATAAGGCTCTCCTAATGTAGGGGTAACACAGGGCTTTGTACTATGCCCATAACACATTTGTGATAAGTAAAGTTTCCCCTTTGCCCCCATCTCTACACATGCCTTCATTCCCATTCTGCATTATCAAATAACCCCCCCCATCTCTACACTCACCCTCATTCCCATACCACACTATCATATATCACCCCTTGCATCTGAAGCTAAGCAACCCCACACCACCCTAAAGTTGCTCCCAGATCATACTGCCCCTTAGGACAGGTACACTGGCTACTCTTTCACTTGGCCACATCCTTGTTTTTACATCACGTCTAGTCTCATTCACTAGCTGTGTGCTTTACAACGCTGAGAGCCTAGAAGCTGGCAGGTGGGCACATAACAGCATTTTTTTTACCATGACTCCTATGTACCTCGAGATGCCTTGAGTCTCTGTCCCAATTTGTTGCGTCGTTCTCAAACAACCTACAGTAGTATTTAGTTTATGTCGGGGTCCTTGCTATTTAAGCCTAATGATTTGCCACTAAGGATGTTACATCACATCATAtttagactaaccctaacccttggacCAACAGGATTGTTTGGTCACCGTGGTCAGGATCTGTGCTCTCCAGGGGCCTTATTTATCAACTGTGCGTACATTTCTTGCTACATTCTGGCATACCTGGAGATTGTAGGATTTCTGGCATACTTGGAGATTGTAGGATTTCTGGCATACTTGGAGATTGATAAATCCTACAAACTGTCCCATGCAACACATACGCATGTTTTCAGTGATAAATCAGAACCAAATTacattatatatttttaacaaaATGCCCTCATTAGCTGTATGATTTGGAGATGTTGGAACTGGGCCATGTCCTTTTCTAAAAGAAAGCTGAATAGCAAATTTGATTACATTTTTGTAGAGGTGTGGGCAGAATGTTTTAATCTTTTGCAGAGtcttttgaaaataaaaatgcattCTGCCTATTGCGAGTACCAAACACTGGTCGTGCATTCTGCAAGATTGATTGTCTATTGAACAATTTAAAAGTAAATGTTGCCTACAGCCCACATgaattgttgttcaatatttTGTTTATCAATACATTGTGTTTCTGAGATTAAATAGGCTATGACATCACACTCCTATCGCACAGCAATACTGAAGACTACCCATACTGTCATAGGTTACCAGCCTATTTGCTTTTGAGCATGGTTGGCTATTGAATGAGCAATGAATAAATGGTAGCCATTATTATAATTCCTGTGCATCAAACACCTCAATTTCCCCAAAATAGCAATCTTTGCTTGCAATACAGTTGATCGACCATTAGAAGTTGCACCTACGCATGGTCTGAGATTTACGTGGAGATGCACttcaaattcaaaatggataaataCCAACCTTTGTGGAAAAAGTGGCCCACACAAGGTTTAGTCATTTTTCTGTGCGCACACAcctttgataaatgaggccccaggtcaAAGCCTACAAACACTGATCTGTGTTATGTACGTTTTCCCCAACATATTGAAGAGGAAGGAACCATTTCAAAATGAAAGATAATGTTTGCATTTTATGTTCTGGGCAAGTACTGAgtttggggggaaaaaacaactcATATTGTAACAtgttttaaaggtagactcagcgatatgacacAGATGCAGAAAGTGAACCGCGGTGGGTCAATTTCCtcaacaactaagagcgttgacGCGTGAGGCTCAACTTCTCCACTGTTTTGGTCCCTTGGCTACCATGCTTTGAACAGCGTGAAGCGAACCcgtgcacatgcgcagatactgtatgactgcatcttgctcatctcaatatctgctgTTCGTGGCAAGATCATTTCTTTGAGTCTACCTTTTAATTTACCAAACCATAAGATGAATGTTGAAGAGAATCCTATTGTTTTGATAGTGGTCAGATAAATGTACCAGGAAGTACTGTGATGCCTGCTATTAAAACGCAACGTGTATACATACTAGTTCCAGACCTGGATCCAATACTTTCAAATATGAAATATGAGCTCGATTTAGATTGCCTGGTACAACAGAACCTATGGAATAGTCCCATTTTTAAATGCAAACGCCAAGCTAAATCAAGCCCACCTTAATTACTTGCAAGTATTTGACCCAGGTTTGGCTGGTATACATGGTACTTTAGGGTTCCTATTACTATTGGCAGAAGAGTGAAACATCTtaagatttttttgttttgtttttttgtgtgttaaaaaaaaattgtgagcCAATTCTAATATTCTATCCAATGGTTCATAACATAAACTAATCTCTCCTATTGTAGACGTGAATCTAGATGAATTACCAGGATCCATTTAAAGATATAAGTATCATTATTCAGATTCAACCTCATCACAGAACACAGGGAGCTGGCTCTCTTATACACTCACTCAGGCTAATCAACCATTTGAATGAAGATGACAATTAACAATGCGGTCATAATATTGAGCACCATTCCTATATAGTTTTCTCAAGACCGGAAATTCCATCCGGGACTTTTTAATCAACTGAAAAGTCCATCACTTGCAGAAGTTTCAGCACCGCTTAACAATATCTATTGAGTGATTGACTTTTAATGCTGATGATCAACATCAAAATGTCAATCTGTCGCGGCGAtctgtcaaatatttttttagaaTGCTAATGGGATACTACTGCTTccttatttttttgggggggtcaaaAGCCCTTTTTCAGTTTGACTTTGAAATGACTGTCCATGAAAGGTTTTTAAtgctttaaatgtattttttactgtAACATGCATTTGTTTATATAGTGCATAGTTCTAATTGATAAATGAAATAAAGCTGTGGTGTATGTATATTCAAGTTTAGAGTCTGGGTCTTAAGAACCCAGCTACTGTATTATGTGTTGAAGGACACATTTTTGTGACTATTTATATTTCCTACTGTCTGTGCATTCAAACCTGACGCATTTCAGGTGATGCAATTTTAGTATTGTTTGTAcctttgcaaaaaaaaacaataataaagAAAGTGATTGAAAAGCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227615 lncRNA upstream 19700 89535492 ~ 89535873 (+) True G201087
TU227614 lncRNA upstream 20083 89535201 ~ 89535490 (+) True G201086
TU227613 lncRNA upstream 21970 89533363 ~ 89533603 (+) True G201085
TU227611 lncRNA upstream 24210 89530886 ~ 89531363 (+) True G201083
TU227610 lncRNA upstream 24807 89530491 ~ 89530766 (+) True G201082
TU227676 lncRNA downstream 45446 89622891 ~ 89716417 (+) True G201142
TU227718 lncRNA downstream 98516 89675961 ~ 89677325 (+) True G201176
TU227783 lncRNA downstream 229480 89806925 ~ 89807763 (+) True G201235
TU227798 lncRNA downstream 244328 89821773 ~ 89822363 (+) True G201241
TU227800 lncRNA downstream 246251 89823696 ~ 89876082 (+) True G201243
XM_021576322.2 mRNA upstream 53224 89500512 ~ 89502349 (+) True mphosph6
XM_021576253.2 mRNA upstream 83055 89470379 ~ 89472518 (+) True snx20
XM_021576243.2 mRNA upstream 133135 89395057 ~ 89422438 (+) False LOC110499234
XM_036958493.1 mRNA upstream 352610 89168314 ~ 89202963 (+) False ankrd27
XM_021576456.2 mRNA downstream 151495 89728940 ~ 89740218 (+) False LOC110499364
XM_021576474.2 mRNA downstream 151495 89728940 ~ 89740218 (+) True LOC110499364
XM_021576501.2 mRNA downstream 195154 89772599 ~ 89793099 (+) False LOC110499385
XM_021576509.2 mRNA downstream 195154 89772599 ~ 89793099 (+) False LOC110499385
XM_036958577.1 mRNA downstream 195154 89772599 ~ 89793099 (+) True LOC110499385
TU227536 other upstream 133135 89419769 ~ 89422438 (+) True LOC110499234
TU225538 other upstream 1687606 87866877 ~ 87867967 (+) True G199223
TU225054 other upstream 2018645 87535936 ~ 87536928 (+) True G198811
TU225027 other upstream 2058838 87493623 ~ 87496735 (+) True G198784
TU224773 other upstream 2405083 87150202 ~ 87150490 (+) True G198575
TU228729 other downstream 869673 90447118 ~ 90447573 (+) True G202039
TU228879 other downstream 1139497 90716942 ~ 90717421 (+) True G202185
TU229614 other downstream 1659580 91237025 ~ 91237991 (+) False LOC110499641
TU230045 other downstream 1788892 91366337 ~ 91539373 (+) True mgat4c
TU230224 other downstream 2044556 91622001 ~ 91624293 (+) True G203414

Expression Profile