RNA id: TU234020


Basic Information

Item Value
RNA id TU234020
length 1388
lncRNA type sense_over
GC content 0.43
exon number 2
gene id LOC110500125
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94348518 ~ 94359922 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGTTCAaactagcctggtctcagatctgtttgcgCTGTCTTGCCAACTATATGCTCATTGTCAGGCCAAACACGGCGAATTACCAATGACAACAATCATGggagttggctatacagcacaaacaaaCCAGTGACCAAGCTTTACGTTCAAACCTCTCTTTACTAACATGCTGAGCGAGCgttacaaaataaatgtacacatacatgttattcaatcattgcagacacactgcacacacgcgtcaacgagcgtctgcgtagccaggcgctaaaatagatcTTGGTTCCATTTGTGACGCTTTGatgcgctgcaagtcccgcctctacCATCTTCTCATTGGTATTTAGAatcatatacccacgtgggtgattgaaagatgaactgaggtccacactccagtcggtggtggtaatgcaccttaaagttggttgccaacccccatataaagtccaaagaagaataagaagcctgaaggaggagagattagtAGAAACAAactcggttgaccgttttatctgtggatcCATTGTCTGAGTAGAGGACCTTgcgcatttcaggtaaaataacaaccaaatgtttatatcccaggacaaatgatctagcaacagcaagctagctaaattggcatatatgtttaatgcttttcgacatGTCCCCAAAAATGATGTCGTTGGTTCAGaattcgttttgatatttcaacctgcgtgtcctgaggCACGCGCCCGTTCTAGTCAGCGTGTTAGAATGGTGATGAGAGGTGACTAGTTCCTGTTTGATGACAGGCAGTGATGTGATTGGTAGATGTGTGATTGATGCATGTTTCTCTTACCGTCTGTCCGTCAGACATTatttgtgtctgaaatggcaccctattccctctatagtgcactacttttgaccagagtcctatggcccctgtagtagtagtaatgcaCTAGAGTCCTATGGCCCCTGGTGGGCAAAAGCACTGCACTAGAGTCCTATGGCCCCtggtggtcaaGGGTGCCTTTTAGCATGCTACCATTGTTCATCTACATAAGAAATGTGATCCTATAAGATATCTATAACAACCGATAGAAAACCTATTGGACGCTATGGGAATGTGACCGAGCATCTCAGAGACAATCAAAAtccaatccaatgttatttgtcacatgcttggtaaacaacagctgtagactaacagtgaaatgcttcctgaTGGGCCCTTCaccaacaatacagagagaaacatagaaaacatTATAGAAAGATAATATTATAGATATATAAAAATGTTTTGTCTAGATCAGGTATGTTTGTCATGTAGAACGGAGTCCTGTCAGCTCTACTCGTTACATTTCTACCTGAAATGTTGTTAACGTTTAACCTCGTCGAATACACCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234023 lncRNA downstream 10473 94338030 ~ 94338266 (-) True G206756
TU234015 lncRNA downstream 19388 94329101 ~ 94329351 (-) True G206751
TU234012 lncRNA downstream 26447 94321722 ~ 94322292 (-) True G206748
TU234007 lncRNA downstream 31091 94315066 ~ 94317648 (-) True G206743
TU234009 lncRNA downstream 34154 94314340 ~ 94314585 (-) True G206745
TU234018 lncRNA upstream 846 94351010 ~ 94355227 (-) True LOC110500125
TU234028 lncRNA upstream 12346 94362510 ~ 94362759 (-) True G206761
TU234040 lncRNA upstream 34954 94385118 ~ 94385353 (-) True G206773
TU234095 lncRNA upstream 132230 94482394 ~ 94482692 (-) True G206827
TU234098 lncRNA upstream 136361 94486525 ~ 94486803 (-) True G206830
XM_021577224.2 mRNA downstream 89906 94251418 ~ 94258833 (-) True LOC110500075
XM_021577199.2 mRNA downstream 105173 94232734 ~ 94243566 (-) True LOC110500060
XM_021577212.2 mRNA downstream 119194 94222366 ~ 94229545 (-) True LOC110500065
XM_036959490.1 mRNA downstream 127593 94188205 ~ 94221146 (-) False LOC110500043
XM_036959482.1 mRNA downstream 127632 94188205 ~ 94221107 (-) False LOC110500043
XM_021577316.2 mRNA upstream 13851 94364015 ~ 94367194 (-) True LOC110500132
XM_021577348.2 mRNA upstream 62080 94412244 ~ 94416157 (-) False LOC110500153
XM_021577355.2 mRNA upstream 62080 94412244 ~ 94417008 (-) True LOC110500153
XM_021577457.2 mRNA upstream 176384 94526548 ~ 94529606 (-) False LOC110500221
XM_021577466.2 mRNA upstream 176384 94526548 ~ 94529608 (-) True LOC110500221
TU234014 other downstream 20556 94327910 ~ 94328183 (-) True G206750
TU234008 other downstream 34821 94313390 ~ 94313918 (-) True G206744
TU234006 other downstream 35965 94312424 ~ 94312774 (-) False G206742
TU234005 other downstream 35965 94312527 ~ 94312774 (-) True G206742
TU232213 other downstream 1385805 92962044 ~ 92962934 (-) True G205192
TU234576 other upstream 266751 94616915 ~ 94617232 (-) True G207244
TU234581 other upstream 279273 94629437 ~ 94629739 (-) True G207249
TU234691 other upstream 412498 94762662 ~ 94776356 (-) True G207340
TU235317 other upstream 1027559 95377723 ~ 95408714 (-) True G207858
TU235447 other upstream 1173804 95523968 ~ 95524227 (-) True G207959

Expression Profile