RNA id: XM_021577854.2


Basic Information

Item Value
RNA id XM_021577854.2
length 2009
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC110500466
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 95703359 ~ 95721115 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATGGAGTTCATATTCGATCAAATTAAGCCTCACGTATCAAACTAGAAATCCACTTTTAGTTTGACCAAATTCGACTATATCTCATTGCCCCCAATACAATAACTCCTCACTTGGTATGCTTAATGTTTATTTTCGAGCGGACAGATTTTAGGCGGAGTCaaccctctcgcttcgcctcttcatCTCTGTTTGTACTTTAGATTCGACAGCGCGTGGCTTAGTGTCCCCGCCCTTCAGCAATCAGATTTTACAATCACGAGGGGAACATGGAGCACGGAGACTTCAATTTCCTGCTGGCTACCGATTCATACAAGGTCACACATTACAAGCAGTACCCTCCCAACACCACCAAGGTTTACTCCTACTTTGAGTGTCGGGCAAAGAAAACTGAATCCACTAAGATTCAGAAAGTGAAATAtgataaaactgtattttatgGACTTCAGTATATCCTTCATAAGTATCTGAAAGGGAAAGTGGTGACTCCACAGAAGATCACAGAAGCAAAGGAAGTTTACCGTGAACACTTTCAGGATGATGTGTTCAACGAAAAGGGCTGGGAGTACATACTGGAGAAGTATGACGGCCACCTGCCCATTGAAATCAAGGCTGTTCCCGAGGGTAGTGTGATCCCCAGAGGTAATGTCCTCTTCACCGTGGAGAGTACTGACCCAGAATGCTACTGGCTCACCAACTGGGTAGAGACAATCCTGGTGCAGATCTGGTACCCCATCACAGTAGCTACTAACTCCAGAGAGCAGAAGAAGATCCTAGCCAGGTATCTACTGGAGACATCAGGGAACCAGGACAAACTGGAGTATAAGCTGCATGACTTTGGCTACAGGGGAGTCTCATCTCAAGAGACTGCTGGCATCGGAGCATCTGCCCACCTGGTGAACTTTAAAGGCACAGACACGGTAGCTGGTATCTGTGTCATTAAGAAGTACTACGGCACCAAAGACCCTGTGCCCGGCTTCTCTGTGCCAGCCGCAGAGCACagCACCATCACCGCCTGGGGTAAGGACCACGAGAAAGATGCCTTTGAGCACATTGTGAGGCAGTTCCCCAACGTGCCCGTGTCCATCGTCAGCGACAGCTACGATATCTACAACGCCTGTGAGAAGATATGGGGAGAGGACCTCAGGAGCCTCATTGAGTCCCGCAGCGCTGACGCACCCTTGGTCATCAGGCCAGACTCAGGAGACCCATTAGATACTGTCCTCAAGGTGTTGGAGATTTTAGGGAGGAAGTTCTGCACCACAGAGAACAGCAGAGGATACAAGGTGCTACCCCCTTACATCCGAGTCATTCAGGGGGATGGTGTGGACATCAACACTCTGCAGGAGATCGTGGCGGGGATGAAGAAACACAGGTGGAGTATAGAGAACGTGGGCTTTGGGTCGGGCGGTGCTCTACTCCAAAAACTGACCCGGGACCTGCTCAGCTGCTGCTTCAAGTGTAGCTTTGTGGTGACCAACGGACTGGGGCTGAATGTGTTCAAGGACCCTGTTGCTGACCCTAACAAAAGATCAAAGAAGGGTCGTCTGTCGCTCCACAGAACACCAACAGGAGACTTTGTGACACTGGAAGAAGGGAAGGGGAGCCTGGAGGAAAACGGTCCAGATCTGCTTCACACCGTTTTCAGAAACGGAGTGATACTGAAGACGTATACATTTGATGAGGTCAGAGACAACGCTAAGATCAGGGACTGTGATCTGGAAGAGTCTGTAGACTGAGGCCTGTACATGCTCCAACACACTACGCAGAAAGGACTGGATCCCTTCTACCTCCCTGTACAGCACTGACCACCAAGGATGATAATAAACAACACTCAACAttgtcctgagagagagagagagagagagacttaattAGCACAACGGTACAAATATATAAACTAAGAAACTATGTATTTTCGACATGTAGGATCATGTACATGTATGATTGAGAAATTatataaaaataacattttattgagaCAAATTAAACTTGAATATTTTGATTTTA

Function

GO:

id name namespace
GO:0009435 NAD biosynthetic process biological_process
GO:0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity molecular_function

KEGG:

id description
K03462 NAMPT; nicotinamide phosphoribosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235357 lncRNA downstream 1305 95698123 ~ 95702054 (-) True G207883
TU235511 lncRNA downstream 8262 95653258 ~ 95695097 (-) True G208014
TU235348 lncRNA downstream 16495 95680851 ~ 95686864 (-) False G207876
TU235354 lncRNA downstream 67944 95634521 ~ 95635415 (-) True G207880
TU235359 lncRNA downstream 69007 95634077 ~ 95634352 (-) True G207885
TU235542 lncRNA upstream 9334 95730449 ~ 95730692 (-) True G208045
TU235543 lncRNA upstream 10260 95731375 ~ 95731596 (-) True G208046
TU235561 lncRNA upstream 42679 95763794 ~ 95764050 (-) True G208060
TU235566 lncRNA upstream 47741 95768856 ~ 95769161 (-) True G208065
TU235597 lncRNA upstream 124544 95845659 ~ 95846084 (-) True G208094
XM_036960040.1 mRNA downstream 38856 95635896 ~ 95664503 (-) True LOC110502485
XM_021580524.2 mRNA downstream 71387 95628449 ~ 95631972 (-) False parietopsin
LOC118944198 mRNA downstream 432087 95271093 ~ 95271272 (-) True LOC118944198
XM_036959906.1 mRNA downstream 578812 95097379 ~ 95124547 (-) True LOC110502417
XM_021577703.2 mRNA downstream 682930 95015675 ~ 95020429 (-) True LOC110500368
XR_002475062.2 mRNA upstream 161016 95882131 ~ 95883679 (-) True LOC110533932
XM_036960073.1 mRNA upstream 330187 96051302 ~ 96092405 (-) True LOC110502500
XM_036960080.1 mRNA upstream 409196 96130311 ~ 96370206 (-) False LOC110502509
LOC110500576 mRNA upstream 912726 96633841 ~ 96640404 (-) True LOC110500576
XM_036960096.1 mRNA upstream 926015 96647130 ~ 96897073 (-) False LOC110500541
TU235350 other downstream 16495 95682037 ~ 95686864 (-) False G207876
TU235346 other downstream 16495 95682623 ~ 95686864 (-) True G207876
TU235358 other downstream 93573 95604228 ~ 95609786 (-) True G207884
TU235447 other downstream 179132 95523968 ~ 95524227 (-) True G207959
TU235317 other downstream 294645 95377723 ~ 95408714 (-) True G207858
TU235579 other upstream 108259 95829374 ~ 95832362 (-) True G208077
TU236021 other upstream 412962 96134077 ~ 96134472 (-) True G208472
TU236221 other upstream 700751 96421866 ~ 96422224 (-) True G208658
TU237272 other upstream 1695706 97416821 ~ 97417188 (-) True G209560
TU237607 other upstream 1780057 97501172 ~ 97502394 (-) True G209802

Expression Profile