RNA id: XM_036960080.1


Basic Information

Item Value
RNA id XM_036960080.1
length 5494
RNA type mRNA
GC content 0.50
exon number 15
gene id LOC110502509
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 96129727 ~ 96370206 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGGGCACGAGAACACTCACACCCTTTCACGCACGGACATTTTCAGAGTTGATGACTGACATTTACAACGACCTAAAAGACCGATGAACATTACCACCGCAATTAACACTGGAAATCTCGGAGACAGCGGGTGCTAGTGCGTGTGGAATAATTCGGTTTCTCTAAAAAATGAACGGATAAGTTTTCAATTTATAACCAGAGCTCGTGTGGCGTCGTTAAAAGCTACACCTCGAAATATATTTGTGTTTTGAAAAGACAACTCCTGGAAATATTAATAAGGAACGTCGAGAGAAGATaagaaaaaaaacatcaaataagtgtgactgtgtgagagacagagcatCACAAAAGGAGGGCAGTAGCGCGCAGCGCGGGACGtatgtgttgatgatgatgatgtgatgcGAAGAATGAAAGACATGTCCTAGATCTGCTCTCCCTGCAATATGTCCTGAGTTGGTCTGTGACTGAAGCCTCCTGCCTCAGTACATTGCGTCTATTTTGGGGTGTATTTCATTATTTGCATTACTGTACCTGAATAAGAAACACAGATAGAGGAAAAAACCAATCCGGACAGTGTCGCCCTGTCACCGTGCGTATAATGGAGACTCGTTTTTTTATGACCGTGTGGTGAAATAATAGCCGACCTATGTAGCCGTTAATTCTATTGGCGATCTATTCTTTTTTTCAATGGATGATTGTGTCAGGGTTCTTAGTTCGTTCTGTCAATAACGCATCGGTAATAACTCATGCCATGTCCCATTACCCGATAGCCCTTCTGGTCTAGAGGTAGCTTTTATACTGCTTCATAGGCATACTTCCTTAATACTGCTATATGAGTGATGGCAATGCCAGTAGTAGAATGTGACAGTAGCAGTGGTGTAGCACATCTACggaacagtagcagtaacagcacCAGCGTTCGCGACAAAACCTCCAGGGCACCGGAGCGCAATGGTTATGTGAAAACACGTTTCATCCAGCCACTGCCCGACAGTCGAGATCGAGCTGGTGATTGCTCATATGGGTCGTGCATGGTGAGGCTCGTATTCAAGATATGGAGTTCCCAAAGACTCCGGCGTGTAGTATGTGTGGGCTCACTGTCTGTTTTTCTCGCTCTGCTGGTTAAATTAGCCGACTGGAGGACTGAGCTCAGTAGCAgtggtaacagtaacagcagGCTGCACTCCAGCTCTCCTGTTCATTTCGTGTCAGGCTACGCAGGGGAGTTGTTGCTAACTCTCTGGCATCTGATCTCGCCTGTATTTACCCTCGTATGTGCCTTCTTTTGGGTGGGTTTGTATTTGATCCGCTGCGGAGTGCTTATCCAAACCGCCCTTTTCCTCCTCACTCTTTGCCACCTGGGAGAGACAGCGGCGTGGGCTCTCGTGCACGGCGGGACTTGGACGGATGAACAACAGCCGTTTTCCTTCAGCACGTCAGCGGCCGCGGTCGTGCTCGCCTGCCTGGCAACCGGCACACTCATGGTAGCGCGGCTCAAGCACGGCATCTCGGTCATAGTGTTCGTAAGCGTCGTTCGGACTATCTCGCTCATCTCGCTGCACAAAGTCCGGGCCACTTGGAGACCTTACGTGGCGTACCTGGTGGGAGTGTTGGGCATCCTACTGGCGAGGTATGCTGATAGTCTACTTCCGAACCAAGGGATACCCAGGGAGGGCTGTACCCCCTCTGTGACTGGGGCGAGGGAAGGGGACGAGACCCCTGTGTTTAAAAGGCGAAGGAGGTCCAGTTCTGTGATCTCCACAGACATGGCACACAGTCAGTCCAACAGCAAGTCACACAGGAGGACCTCGCTGCCATGCATTCAGAGGGACCAGATGCCAGAATGGGACAACAAGAGAAGCTCAAGAGGATCTCAGTTGTTGGGCACCAGTGTGGTGGTGGATATAGCTGTGATGGGCGAGGCCCACGGTCTGATCTCAGACCTGCTGGCGGACCCCTCGCTGCCCCCCAACACCTTCACCTCCCTCCGTGCCGTCAGCAGCCTGCTCACCACTCAGCTCAACTTCCAGCCCCTGCACCGTCCGCGCCTCGCTCCCCTGGGCGTCAACCTGGGAGACGCCTACATCTGCTCCGACTCAGAGGAAGGATCTGAGAAGATAGGGGAGAAGACCAATACCTTACCTAAGCGTCTGCGGCGTAGCCTGCACCCGGGGCTATTGAGGAGGACCTCCTCTACATggaccaccaccacctcagctaCGGGCCTGCCCACCATCGAACCCGGACCAGTACGCAGGGCCAGCATCAGCATCAAACCCTTCCACGAACCGCTCGTCTGCAGCTGTGGGAGACCGTACATAAAGCTGAGCCATGGGGAGGGATCCATGGACAAAGGGGACAGGATACACCGGACAGAGGATCAGGTGGTGGCATCGTCAGACTACGACAGTACCCACGAGGCCAACCACAGCGACAGCAGCGACGTAGCGCCGACAGAGGAGGGGGACGCAGAAGGGGGCAAAAACACCCCCCAAAACCTCGTCATGCTACCTGCAGAGGAAAAGCCCCAGCTGGCCCCGGAGCCGTTAGTGATGGAGGACTTGGAGCCCCTAATGAGCCACCTCAACCAATGGAACTTCCCCATCTTCAGCTTGATGGAGAAGACCCAGGGCAAATGTGGCCGCATCCTCAGCCAGGTCTCTCACAGGCTTTTTGAAGACACAGGCCTATTTGAGACCTTCAAGATCCCGGTTCACGAATTCATGAACTACTTCCATGCTTTGGAGAATGGCTACAGAGACATACCATaTCACAACAGAATCCACGCTACAGACGTTCTCCATGCTGTCTGGTACCTCACTACCCAGGCCGTACCAGGTCTGCCCAGCCTCATCACTGACCATTGCTCTGCCAGCGACTCAGACTCTGACAGTGGCATCACGCACAGTCACATGGGCTACCTGGTGTCGAAGACCTACAGCGTGTCGGAGGATGGGTATGGTTGCCTGTCGGGGCTCATCCCAGCCCTGGAGCTCATGGCTCTCTACGTAGCAGCAGCCATGCATGACTACGACCACCCTGGCAGGACTAACGCCTTCCTGGTGGCCACAAGTGCACCACAGGCAGTGTTGTATAACGACAGGTCGGTGCTCGAGAACCACCACGCCGCCTCTGCCTGGAATCTGTTCATGTCCCGTCCGGAGTATAACTTCCTCGTCAACTTGGACCACGTGGAGTTCAAACGCTTTCGCTTCCTGGTCATAGAGGCCATTCTTGCCACTGACCTCAAGAAACACTTTGACTTCCTGGCAGAGTTCAATGCCAAGGTAGGTGATGACGTGACGAGGGGTATTGATTGGtccaatgagaatgacagactGCTGGTGTGTCAGATGTGCATCAAGCTAGCTGACATCAACGGCCCACTGAAACACAAGGACCTGCACCTACAGTGGACCAAGGGCATCGTCGATGAGTTTTATGAACAGGGTGACGAGGAGTCCAGCCAAGGTCTTCCCATCAGCCCCTTCATGGACCGCTCTGCTCCTCAGCTGGCTAAGCTCCAGGAGTCCTTCATCACCCACATCGTAGGACCGCTCTGTAACTCATACGACTCCGCAGCACTCATGCCCGGACGTTGGGTGGAGCCTAAccccgaggaggaggaggaggagcacgaggaagatgaagaggaggatacGACAGAGGATGAAGATGGGTCTACTAGCTCAGAGGCATCGCAGAAAGGCAAAGCAGCTCccaagaagaggaggaaagtgtTCTGTCAGATCACCCAGCACCTGATGGACAACCACGAGATGTGGAAGAAGGTGATCGCAGAGGAAACGCCCAAGCaaaacaatgtagctgagccaaTCCTATCCATccacgaggaggaggaggagccagggagcagggaggatgtagtggagggggaggagccagaagaggaaggggaggtgcCAGAGGAGGAAATAGACGACGAGTGGCCAGCGCCCCCGCAGGACGAGTCTGAACCTGCAGAAGAGGCTGGGCCAGAGTGAGGGCCCCAAAGGCTCGTGGCGAGTGCTATTCGGGATCCTTGGGATAttgctaccctaaaccctaacccctaccctaaacttaaccataaaccttacctaaccttaaccccttacctaaaccattttaaatgtaaacttaaatggggtagggatgtcccaaggatcccagatagcgaGGACCAAAGGTTCTTGGGAATGAAATAAAGCAGCCCCTATCCCGAGGCAGAACATGAAATTACTTTTTCTATCCTATTGACAAACAGGCTgactgattttatttttttttgccagCACATTCACTTAGACACAACACTGTAGAAGTTTGGGACATTGTGCCTAATGAAAATGTAACACAGGGTGGGAGATATTTACTTGTGTTTTACACATTTTATATATAAAAACACAGAATACAAGTCAGGTTCAGAAACATCGGTCAATCATCCTCTTGAGTAACTTTCCATTATTACAATAACCTACAGGATCATCTACTGGATGTAACAAACTGGTGTAATAGTTCACGAAATGCACTCTTTTTGCTACCGTCAAGAGTGGATTGAGACTTGGTCGTGAAGACCTCAAACCCATTGTGTAAACAACGGACTGCAGAGACTGCCGCCAATTTATATATACGAAATATTTTCTAAAATGCAATTATACTTAAACATCACATGCACCTGTACTCATGTGTTTTGTTTAGGGGGGGGGATTTTAAGTATTTTCTCTGGGTCTGATAATCTCAGTAATATGGTTCTATTTTAACTATGTGGATTGAGAAGGGAAAAATTTGACTGAACAGCTTCATACAAATCTACATTTTCCATCTTTATTATTGTTCTTTAATGGATTCCACATTGCATCTCACACCTATAATCTGTAAGCACACGACCGCAAGCATACCCTCTAGGTATCTTTTGGTTTTACTGACAAACTGAAACGGTCGGTATAGCACACCCTTTTAATATAGGCCCCTCTAGGATCTATGACATCGGCAGAACCATCAGCTGGTAACTTTTCTCATGTCATGGTACTCCAGGTGAACAGACCATATTTGACTTCAGCCTTCAGCCTTTTTGACCAATGGCTTGGTTCAGAGGAAGTTGGAACACACTACAGGGTCTTTTTTGACCAATGGCTTGGTTCAGAGGAAGTTGGAACACACTACAGGGTCTTTTTTGACCAATGGCTTCGTTCAGAGGAAGTTGGAACACActaaaaggagaggaggagaggagtcagaaaaAGACATGCTAGTACTTTAGGTCTTATGAGTGTTTCTCTAATACAGTTAATTGAAAACAGGCCTAGTGTGTAAGATAATGAGGTCCTATGACTATAAGGCATAGTTCCTCAACCTAACTCAAAGACAGGATTCTTCCTCCACTACCAGATAAACTGACTACATAGATCACCAGGAGACAATATACTGTTTTTACTACTTATTGACTATTGATTCTCGTTTCAGTAacccccctccttccctttccAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236016 lncRNA downstream 1077 96127191 ~ 96129234 (-) True G208468
TU236015 lncRNA downstream 2238 96127169 ~ 96128073 (-) False G208468
TU236017 lncRNA downstream 3474 96125952 ~ 96126837 (-) True G208469
TU235902 lncRNA downstream 5723 96123042 ~ 96124588 (-) True G208368
TU235895 lncRNA downstream 12871 96109996 ~ 96117440 (-) True G208361
TU236190 lncRNA upstream 17045 96387251 ~ 96387473 (-) True G208629
TU236333 lncRNA upstream 129611 96499817 ~ 96500344 (-) True G208765
TU236338 lncRNA upstream 134186 96504392 ~ 96504628 (-) True G208769
TU236346 lncRNA upstream 144360 96514566 ~ 96514766 (-) True G208777
TU236350 lncRNA upstream 147993 96518199 ~ 96518719 (-) True G208781
XM_036960073.1 mRNA downstream 37906 96051302 ~ 96092405 (-) True LOC110502500
XR_002475062.2 mRNA downstream 246632 95882131 ~ 95883679 (-) True LOC110533932
XM_021577854.2 mRNA downstream 409196 95703359 ~ 95721115 (-) True LOC110500466
XM_036960040.1 mRNA downstream 465808 95635896 ~ 95664503 (-) True LOC110502485
XM_021580524.2 mRNA downstream 498339 95628449 ~ 95631972 (-) False parietopsin
LOC110500576 mRNA upstream 263635 96633841 ~ 96640404 (-) True LOC110500576
XM_036960096.1 mRNA upstream 276924 96647130 ~ 96897073 (-) False LOC110500541
XM_036960106.1 mRNA upstream 276924 96647130 ~ 96897073 (-) False LOC110500541
XM_036960115.1 mRNA upstream 276924 96647130 ~ 96897073 (-) False LOC110500541
XM_036960116.1 mRNA upstream 276924 96647130 ~ 96897073 (-) True LOC110500541
TU235579 other downstream 297949 95829374 ~ 95832362 (-) True G208077
TU235350 other downstream 443447 95682037 ~ 95686864 (-) False G207876
TU235346 other downstream 443447 95682623 ~ 95686864 (-) True G207876
TU235358 other downstream 520525 95604228 ~ 95609786 (-) True G207884
TU235447 other downstream 606084 95523968 ~ 95524227 (-) True G207959
TU236221 other upstream 51660 96421866 ~ 96422224 (-) True G208658
TU237272 other upstream 1046615 97416821 ~ 97417188 (-) True G209560
TU237607 other upstream 1130966 97501172 ~ 97502394 (-) True G209802
TU237655 other upstream 1248653 97618859 ~ 97619212 (-) True G209841
TU238041 other upstream 1774114 98144320 ~ 98145517 (-) True LOC118936884

Expression Profile