RNA id: XR_005039512.1



Basic Information


Item Value
RNA id XR_005039512.1
length 188
RNA type mRNA
GC content 0.40
exon number 1
gene id LOC118944196
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97647861 ~ 97648048 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaaacttttccaaaaaaaaaaaaaaaaaaaaaaaatctgttcttatcagtttaatatctgatacgtcccctaTCTGGGGACcatatattaaattgatttttgGAATAGGGAGATGGAataggggcttgctccgtccactccacgcatcgacctggtattgcagtacctccaggAACGGTGCACCCCCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU237681 lncRNA downstream 1587 97619795 ~ 97646274 (-) True G209866
TU237645 lncRNA downstream 8252 97621775 ~ 97639609 (-) False LOC118944190
TU237673 lncRNA downstream 29837 97617666 ~ 97618024 (-) True G209858
TU237711 lncRNA downstream 35758 97609516 ~ 97612103 (-) True G209875
TU237730 lncRNA downstream 43484 97604157 ~ 97604377 (-) True G209883
TU237678 lncRNA upstream 825 97648873 ~ 97653324 (-) True G209863
TU237675 lncRNA upstream 4644 97652692 ~ 97689105 (-) True G209860
TU237643 lncRNA upstream 7108 97655156 ~ 97683756 (-) True G209834
TU237732 lncRNA upstream 20994 97669042 ~ 97669516 (-) True G209885
TU237741 lncRNA upstream 32503 97680551 ~ 97681121 (-) True G209891
LOC118944213 mRNA downstream 21964 97625781 ~ 97625897 (-) True LOC118944213
LOC118944190 mRNA downstream 25677 97622006 ~ 97622184 (-) False LOC118944190
XM_036934797.1 mRNA downstream 151363 97494344 ~ 97496498 (-) True LOC118937309
XM_036960153.1 mRNA downstream 259908 97089207 ~ 97387953 (-) False LOC110502515
XM_036960120.1 mRNA downstream 569961 97019591 ~ 97077900 (-) False pik3c2g
XM_036960269.1 mRNA upstream 4158 97652206 ~ 97689832 (-) False LOC118943865
XM_036960208.1 mRNA upstream 7103 97655151 ~ 97660464 (-) True LOC118943862
LOC118944194 mRNA upstream 34890 97682938 ~ 97683118 (-) True LOC118944194
XR_005039177.1 mRNA upstream 42477 97690525 ~ 97691443 (-) False LOC118943869
LOC118944207 mRNA upstream 69692 97717740 ~ 97717837 (-) True LOC118944207
TU237655 other downstream 28649 97618859 ~ 97619212 (-) True G209841
TU237607 other downstream 145467 97501172 ~ 97502394 (-) True G209802
TU237272 other downstream 230673 97416821 ~ 97417188 (-) True G209560
TU236221 other downstream 1225637 96421866 ~ 96422224 (-) True G208658
TU236021 other downstream 1513389 96134077 ~ 96134472 (-) True G208472
TU238041 other upstream 496272 98144320 ~ 98145517 (-) True LOC118936884
TU238753 other upstream 1270400 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other upstream 1294426 98942474 ~ 98943797 (-) True LOC118943882
TU238870 other upstream 1377684 99025732 ~ 99026118 (-) True G210765
TU239331 other upstream 1475185 99123233 ~ 99123658 (-) True G211127

Expression Profile