RNA id: TU238657


Basic Information

Item Value
RNA id TU238657
length 563
lncRNA type sense_over
GC content 0.44
exon number 1
gene id LOC110500748
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98587916 ~ 98601250 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAATTCCACCTCGACCACAGCTCGAGCTCCGCAAAACACAACTGTTGTCAATACCACTGACCCAGAAAAGCCAaagccctttttggttccagagtGCCGGTACCTCTAGGTCTCAGGAGGGCAGTAGAGATGCACAGAGCTGTACGCCACACCTGTGTGCCGCCtctgagaaagagaggaaaacagcaGGAGGAGAGATACTCTACAGTCCTTGTTCATACATATTGCCTGGTCCTGAAGCCAAGAGAACCTGTATGAAGAACCACCTGTTCCCCTCGACTCCCTCAACTTGAAAGAAACTTGAGTTCCATCTACTCTGTGCTCCTGTTAGAcacaacagagaaacagaggaaagTGAGGAGACAACTGGAAGAGATTGCTTTTGAGTAAAAGTTTAGGCTCTAGAATATATTATAAAAAGTGTAGTGGGTTAAGAACAACTAGTAAACCCCTACTTTTTCGAATTATACTTCAGTAGTTTAGGAAAAATGTCTCATAAAATTATGGTAAAATGctaaataaatgtaatttatgTTATGGTAACGTGCAGCCCTCCCCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238661 lncRNA downstream 9678 98590028 ~ 98590376 (-) True G210608
TU238660 lncRNA downstream 10150 98589659 ~ 98589904 (-) True G210607
TU238658 lncRNA downstream 10965 98588600 ~ 98589089 (-) True G210605
TU238652 lncRNA downstream 17151 98582687 ~ 98582903 (-) True G210599
TU238651 lncRNA downstream 17718 98582106 ~ 98582336 (-) True G210598
TU238690 lncRNA upstream 37593 98638209 ~ 98638546 (-) True G210628
TU238685 lncRNA upstream 39078 98639694 ~ 98641715 (-) True G210623
TU238705 lncRNA upstream 52945 98653561 ~ 98654490 (-) True G210632
TU238711 lncRNA upstream 72770 98673386 ~ 98678696 (-) True G210638
TU238774 lncRNA upstream 110530 98711146 ~ 98712557 (-) False G210683
XM_036960421.1 mRNA downstream 64364 98521998 ~ 98535690 (-) True edc3
XM_036960381.1 mRNA downstream 86193 98474734 ~ 98513861 (-) True LOC110500720
XM_021617578.2 mRNA downstream 173396 98424015 ~ 98426658 (-) False lmo2
NM_001160508.1 mRNA downstream 173679 98424340 ~ 98426375 (-) True lmo2
XM_021578235.2 mRNA downstream 247569 98313023 ~ 98352485 (-) True LOC110500713
XM_021580609.2 mRNA upstream 42374 98642990 ~ 98689136 (-) True LOC110502529
XM_036960449.1 mRNA upstream 92140 98692756 ~ 98723102 (-) False LOC110500839
XM_036960450.1 mRNA upstream 92140 98692756 ~ 98723102 (-) True LOC110500839
XM_036960440.1 mRNA upstream 195233 98795849 ~ 98797788 (-) False LOC110500636
XM_021578120.2 mRNA upstream 195343 98795959 ~ 98808194 (-) True LOC110500636
TU238041 other downstream 454537 98144320 ~ 98145517 (-) True LOC118936884
TU237655 other downstream 980842 97618859 ~ 97619212 (-) True G209841
TU237607 other downstream 1097660 97501172 ~ 97502394 (-) True G209802
TU237272 other downstream 1182866 97416821 ~ 97417188 (-) True G209560
TU236221 other downstream 2177830 96421866 ~ 96422224 (-) True G208658
TU238753 other upstream 317832 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other upstream 341858 98942474 ~ 98943797 (-) True LOC118943882
TU238870 other upstream 425116 99025732 ~ 99026118 (-) True G210765
TU239331 other upstream 522617 99123233 ~ 99123658 (-) True G211127
TU239562 other upstream 1015060 99615676 ~ 99615914 (-) True LOC118936886

Expression Profile