RNA id: XM_036960562.1


Basic Information

Item Value
RNA id XM_036960562.1
length 3115
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC118943885
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98914015 ~ 98946069 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCCATCCTGAAACTGCCGGGTAGGGCAACAGGTACGCATGCTTTTTCCTCGTGTGTATGTTTTCTTCAAATGATGACACTAGTGCAGACCTCTGCGTAGTTTGATCTGTCGACCTAACGAGCTACATGTATTTGGGTCAGAGGAGACATTGTTTTCCTGTACCTTTAAGAGTGGGGCGCAGTGTGCAGGACTACACTGGGGACGTAATTCAAACACTTGGCTCCTCCTAATTTTACGGTTTCGTTTCCTGGAGGTCGAGCCTGTCGTGTTGTTGACAAAAAAAACGTAACAAATATCGTTTTTTACTGGGCAAAATGGGTCAGTCGTTGCCGACCCCGGACTGCGAGCCCTCGGTGTGTCCTTTGTGCCACGGTATATGTCGGAATCCGACTGCGCTGAGATGCAAACATATTTTCTGCTACTGCTGTATACAGGAGTTATGGAGTGGTTCGCCCACCGGTCCATACTACTGCCCCGAGTGCAAGGAGGAGTACAAGACATTACCGGTGGGGTTCAAGAGAGACACTACCGCAAGTCCGTGGCGACATGAAGCGCCTGCACATACACGCACCAGCTCAGCGACAGAAGGCAGAGCCAATGAAGAGGATGTCATTGAGATCAATTCGGCGGGCTGGACCCTTGGGAAGAGAGCCTCCATCTCTCAATCCAAGCGTCTGTTAGGGAAGAGACCAGCCAGTTCTCCTGTCCCAGGAGGCCATCTTCACGACAACAAGAGACAAGCCACTGgcagctcctcttcctcccactccAGGGGAAGGTCTGGTGACCGTAAGAGACCCgccacttcctcttcctcctcttcagccaATCAGAACACATCGTCTGACGTCGAGTTGTCCAGTGAGGAGGAGGTGCCAGCAGCACCATTCTCCTTAGCAACCAAACCGTCTAGTACTGCGTCCGTCGCCGTCAGAGGTCCGGACCTGACACGTGATAGGTCTAGGTCCCCTAGGAGAGACCCACCCATTGAGCTGGACGAACCCCCTGCTGCAACAGAACCTCTTACAAGAGAACCACTGAATGACCCTAGAAAATCACCTGAAGCAGCAGCAGGTCACATGACCAACACATCGCCAAGAAGAATCACCGCCGTTGAGCTGGACCCACCTCTACCCCCTGCAAGAGATCCGTACACACCCGCCAAGAATCCTGCTGAAACGACCATAACAACCCATTTACGTTTAGTCACCCCTACGAAGGAGAAGCCTGTTGAAGCTGAGCGGGAGCCTCTTCCAGAGATCTCCAACAGATCTGGTCCAATCGGCACCTCCACCTCTCCTACCCGCGCTGCCAACAACCTGTCCCCTGGACGTACCAACCTGTCCCCCAGCCTGGCTCGTCAAACCTCTAGGGAGACCTTCCTACCCTGCCACTATTGCCCCAGCCAGGGCTCTCTCCCTGCGGTgaagacctgcctggtgtgtggaGCCTCCATGTGCTCCGACCACCTCCGGCCTCACCTGGAGTCCCCTGTCTTCCAGAGCCACACCCTGGTACCCCCTGTGGAGGACACCTCACCCTGGAGGTGCCCGGAACACCAGGAGATGAACCGAATCTACTGCCGTCAGTGTAGTGTGCGTGTCTGTACCGTGTGTACCGTGATCGGGTCGCACCGGGACCACGCTTGCGTCAGCATCAGAGAGGCCGAGAGGGAGCTGAGGGGGAACCTGAAACAGGAGATGAAGAAGATGCAGGGAGCGGAACAGTCTTGAAATCAGCAGAGTTACTGAGATGACAGAGAAGAAACAGAGATTCCAGGTGTCGTCAACAACGTAAAAGGAATTGATGCCATAAGCCCGTCTTCTAAAGATGAGTTCAGAGTTTGAAAAGTTGTTAAAAGACAAGAAATCACCTTTTGAGACGTCAATACACTATTCCGGCTTCCTAGAGTCCTTGTTTCGAGACCTCTGTCTCATTAGAGGTAGAGGACTTGAAGAAAGTCAGCAACTCCCTCACAGTCTTACTAAGTGAAAAACAGAAACAAGAAAAGCAGCTGAATAAagggaagaagaaaaagaaaggtGTGGTTGCTGCCGGAGGGATGAAGTCCAAGATGAAGGATGACCTATCGGACTACGGAGAGTTCGATGGAGGTTACGCACAAGACTACGAGGACTTCATGTGACGTGACACCAACCCGATTTCTGTCTCAAacgacaccctgttccctatgtagaaccctttatataggggatagggtggcaTTTAGTAGGGTTCCAATGTCTGTCCCCATTCCCCCTCCGCTCTGCTCCACCAAGCCCCCTCAGGGCATGACCTATGACCTATTCTACTGCCCAGAGCCATCCAATGATAACCACCCTTATGTCGCCCGCCGCCAGCCGCACACAAACTCGATTCTGAAAAGAAGTGTTGAATGGTTTGACGAGGAACGTCTGATTTCAGCAGGGTTGTTTCTCCTCGTTAGAAATTCCTTCAACGATTCCTCGAAACTGACTGACCAATAAGACTGTGTTCTGGATACCAAAATGTTTCACCTCCCATAATGAGATGCGAAAACCCAGCATCaaacttgttttttttcccaATCCTAGAATGAATTTAATTAGATCTTTTAAAATAAATGATCTGTCAAACAAAATTTAATTGTTACTGTTTGACgaaggaaaatacattttgtattttaCATTTTGCATTTCAATAAATAGCCGTAGGGTCAAGTAGTAAACACGGCGCTGACCATTTCATCCTGGGCCTATGTTCACAAAACGTCTGAGTAGATacgctgatctagaatcagatgGCCCCCCCccttcttattcattatgatcagaAAAagactaaactgatcctagagcaGCACTGCTACACTGAGAAACCCAGTATAATCGCTTCCACTGAGTTGAAGCAACAATCACTCTAGGTCTCCTTGGCATAACTTTGCACGGCTTGTATCAAGTGAGGTGAGAAACAGACCAAATGTATTTAGGAAAGAAGGTTGTACTGGGTTATTATCACTTGTTTTTCTTTTTCACAGCACATTTTCAGGATTGGTAATGGAAATATAAACAATATTAAAGATTAAAGTTGTCTTATTTTATCCACCTAATTTAATAAAATCACtgttttaagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238832 lncRNA downstream 3722 98909936 ~ 98910293 (-) True G210728
TU238745 lncRNA downstream 72099 98835671 ~ 98841916 (-) True G210656
TU238813 lncRNA downstream 104012 98809799 ~ 98810003 (-) True G210710
TU238810 lncRNA downstream 126984 98786626 ~ 98787031 (-) True G210707
TU238809 lncRNA downstream 127555 98785611 ~ 98786460 (-) True G210706
TU238834 lncRNA upstream 11920 98932956 ~ 98955541 (-) False G210730
TU238835 lncRNA upstream 11920 98932956 ~ 98933448 (-) True G210730
TU238843 lncRNA upstream 42715 98963751 ~ 98964109 (-) True G210738
TU238862 lncRNA upstream 95677 99016713 ~ 99016971 (-) True G210757
TU238865 lncRNA upstream 97111 99018147 ~ 99018442 (-) True G210760
LOC118944227 mRNA downstream 4945 98908962 ~ 98909070 (-) True LOC118944227
XM_036960543.1 mRNA downstream 15891 98895268 ~ 98898124 (-) True LOC110510475
XM_036960550.1 mRNA downstream 15894 98895140 ~ 98898121 (-) False LOC110510475
XM_036960558.1 mRNA downstream 15895 98895181 ~ 98898120 (-) False LOC110510475
XM_036960538.1 mRNA downstream 21872 98876303 ~ 98892143 (-) False LOC118943884
LOC118944228 mRNA upstream 10842 98931878 ~ 98931986 (-) True LOC118944228
XM_036960525.1 mRNA upstream 15747 98936783 ~ 98944011 (-) False LOC118943882
XM_036960526.1 mRNA upstream 15747 98936783 ~ 98944041 (-) False LOC118943882
LOC118944200 mRNA upstream 28872 98949908 ~ 98950121 (-) True LOC118944200
LOC118944229 mRNA upstream 33095 98954131 ~ 98954239 (-) True LOC118944229
TU238041 other downstream 768498 98144320 ~ 98145517 (-) True LOC118936884
TU237655 other downstream 1294803 97618859 ~ 97619212 (-) True G209841
TU237607 other downstream 1411621 97501172 ~ 97502394 (-) True G209802
TU237272 other downstream 1496827 97416821 ~ 97417188 (-) True G209560
TU236221 other downstream 2491791 96421866 ~ 96422224 (-) True G208658
TU238756 other upstream 21438 98942474 ~ 98943797 (-) True LOC118943882
TU238870 other upstream 104696 99025732 ~ 99026118 (-) True G210765
TU239331 other upstream 202197 99123233 ~ 99123658 (-) True G211127
TU239562 other upstream 694640 99615676 ~ 99615914 (-) True LOC118936886
TU239603 other upstream 789665 99710701 ~ 99713563 (-) False LOC110502568

Expression Profile