RNA id: XR_005039307.1


Basic Information

Item Value
RNA id XR_005039307.1
length 2365
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC118944014
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 101701386 ~ 101703960 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGACATGTTCTTTAGACAATGTAGCAAGGTGGTATACACCACAGGGTCATGTTCTTTAGACGATGTAGCAAGGTGGTATACACCACAGGGACATGTTCTTTAGACGATGTAGCAAGGTGGTATACACCACAGGGTCATGTTCTTTAGACGATGTAGCAAGGTGGTATACAACACAGGGACATGTTCTTTAGGCGATGTAGCAAGGTGGTATACACCACAGGGTCATGTTCTTTAGACGATGTAGCAAGGTGGTATACACCACAGGGACATGCTCTTTAGACGATGTAGCAAGGTGGTATACACCACAGGGTCATGTTCTTTAGACGATGTAGCAAGGTGGTATACACCACAGGGACATGCTCTTTAGACGATGTAGCAAGGTGGTATACACCACAGGGACATGTTCTTTAGACGATGTAGCAAGGTGGTATACACCACAGGGACATGTTCTTTAGATGATGTAGCAAGGTGGTATACAGGGACATGTTCTTTAGACGATGTAGCAAGGTGGTATACAGGGACATGTTCTTTAGACGATGTAGCAAGGTGGTATACACCACAGGGACATGCTCTTTAGACGATGTAGCAAGGTGGTATACACCACAGGGTCATGTTCTTTAGACGATGTAGCAAGGTGGTATACACCACAGGGACATGTTCTTTAGATGATGTAGCAAGGTGGTATACAGGGACATGTTCTTTAGACGATGTAGCAAGGTGGTATACAGGGACATGTTCTTTAGACGATGTAGCAAGGTGGTATACACCACAGGGACATGTTCTTTAGATGATGTAGCAAGGTGGTATACACCACAGGGTCATGTTCTTTAGATGATGTAGCAAGGTGGTATACACCACAGGGACATGCTCTTTAGACGATGTAGCAAGGTGGTATACACCACAGGGTCATGTTCTTTAGACGATGTAGCAAGGTGGTATACACCACAGGGACATGTTCTTTAGATGATGTAGCAAGGTGGTATACAGGGACATGTTCTTTAGACGATGTAGCAAGGTGGTATACAGGGACATGTTCTTTAGACGATGTAGCAAGGTGGTATACACCACAGGGACATGTTCTTTAGATGATGTAGCAAGGTGGTATACACCACAGGGTCATGTTCTTTAGATGATGTAGCAAGGTGGTATACAGGGACATGTTCTTTAGACGATGTAGCAAGGTGGTATACACCACAGGGTCATGTTCTTTAGGCGATGTAGCAAGGTGGTATACAGGGACATGTTCTTTAGACGATGTAGCAAGGTGGTATACACCACAGGGTCATGTTCTTTAGACGATGTAGCAAGGTGGTATACACCACAGGGTCATGTTCTTTAGACGATGTAGCAAGGTGGTATACACCACAGGGACATGCTCTTTAGACGATGTAGCAAGGTGGTATACACCACAGGGTCATGTTCTTTAGACGATGTAGCAAGGTGGTATACACCACAGGGACATGTTCTTTAGATGATGTAGCAAGGTGGTATACAGGGACATGTTCTTTAGACGATGTAGCAAGGTGGTATACACCACAGGGACATGCTCTTTAGACGATGTAGCAAGGTGGTATACACCACAGGGTCATGTTCTTTAGACGATGTAGCAAGGTGGTATACACCACAGAGACATGTTCTTTAGACGATGTAGCAAGGTGGTATACACCACAGGGACATGTTCTTTAGACGATGTAGCAAGGTGGTATACACCACAGGGACATGTTCTTTAGACGATGTAGCAAGGTGGTATACACCACAGGGACATGTTCTTTAGACGATGTAGCAAGGTGGTATACACCACAGGGACTTGGTAGCCATAGAACGTTGTGATCCTCTAAGAACTAGAACAAGGTGTTCTCATTCCAATTCTACTGTTCCAACAGCAAGGTCCTTTCAGTGGAACCCCATTGGCTGTGTTGTCTAGTGCTTCAGTGATAGGAAGGGTTTTTCTGTGGAACCCCATTGGCTGTGTTGTCTAGTGCTTCAGTGATAGGAAGGGTTTTTCTGTGGAACCCCATTGGCTGTGTTGTCTAGTGCTTCAGTGATAGGAAGGGTTTTTCAGTGATTTTGTGCCTAATCTTTATTTGTGCTTTTATAATTGTATTTTTGGTGTTAAGATAGATCCTCCTCGCCCCCCTGAGATACACATGACGCAGACGGACAGATGACGGAGGCGTGTGATagatagaagaagagaaaggagagagagtgggactgaCATCAAAGAGAAATAACATCACAAGGTGtcacactaactaactaactaactaaactaAGCTATGACTACGTCATTACTAACTACAGCATTACTTCACAGccaaaccagacacacacacatacacacacacacacacacaaccaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241680 lncRNA downstream 6815 101694232 ~ 101694571 (-) True G212823
TU241674 lncRNA downstream 43435 101655495 ~ 101657951 (-) True G212817
TU241668 lncRNA downstream 55162 101645642 ~ 101646224 (-) True G212811
TU241658 lncRNA downstream 64488 101636340 ~ 101636898 (-) True G212805
TU241656 lncRNA downstream 64717 101636108 ~ 101636669 (-) False G212805
TU241682 lncRNA upstream 3659 101707619 ~ 101707924 (-) True G212825
TU241696 lncRNA upstream 16162 101720122 ~ 101721030 (-) True G212838
TU241698 lncRNA upstream 17421 101721381 ~ 101721641 (-) True G212840
TU241699 lncRNA upstream 17847 101721807 ~ 101722089 (-) True G212841
TU241708 lncRNA upstream 22825 101726785 ~ 101727027 (-) True G212848
XM_036961083.1 mRNA downstream 106000 101560267 ~ 101595386 (-) True LOC110512506
XM_036961033.1 mRNA downstream 147636 101482142 ~ 101553750 (-) True LOC110501253
XM_036961026.1 mRNA downstream 147637 101482142 ~ 101553749 (-) False LOC110501253
XR_005039310.1 mRNA upstream 2045 101706005 ~ 101706647 (-) True LOC118944015
XM_021595701.2 mRNA upstream 41308 101745268 ~ 101746547 (-) False LOC110517830
XM_021578959.2 mRNA upstream 209024 101912984 ~ 101916443 (-) True LOC110501407
XM_021578971.2 mRNA upstream 293839 101997799 ~ 102000087 (-) True LOC110501416
XR_005039316.1 mRNA upstream 583935 102287895 ~ 102292186 (-) False commd4
TU240995 other downstream 521625 101101934 ~ 101179761 (-) False LOC110502631
TU240823 other downstream 987133 100696706 ~ 100714253 (-) True pkp3a
TU240400 other downstream 1221596 100470802 ~ 100479790 (-) True LOC110502607
TU240399 other downstream 1228862 100469266 ~ 100472524 (-) False LOC110502607
TU240396 other downstream 1245953 100455149 ~ 100455433 (-) True G211904
TU241686 other upstream 8278 101712238 ~ 101712847 (-) True G212829
TU241693 other upstream 15407 101719367 ~ 101719732 (-) True G212836
TU241748 other upstream 39055 101743015 ~ 101746551 (-) False LOC110517830
TU241746 other upstream 39102 101743062 ~ 101746551 (-) False LOC110517830
TU241747 other upstream 39102 101743062 ~ 101746551 (-) False LOC110517830

Expression Profile