RNA id: TU118282


Basic Information

Item Value
RNA id TU118282
length 368
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G105041
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1805696 ~ 1806063 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAATATATGACATCATTCACCGTCTCTCAACTTCTCCTCCTTTCGAAGAGATCAAATTaatatgtatatttattttatattccaAATGCGGGCATTTTGTGAATTTCTGGTAATACGTAAATtatgttttatttgatttgattttttatttgattttttaaatttCCCTGCCTGCCGTGAGCAAGAAATGTGATGTTTTTATCATGTGGATTGTGCCGATGCTCAAAGTAAGTCTGTCCTTGTTCCTTTTGTATAATGGACGGAGTAGGTTTGTGTTGTAGTACTCAAACAGCCTCAAAATCTATTGTTAATAGAACTTGTTGTTCttcgtattattattattattatcgaCTGCTTTAGATGCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118280 lncRNA upstream 5703 1799673 ~ 1799993 (+) True G105039
TU118284 lncRNA upstream 6372 1798498 ~ 1799324 (+) True G105043
TU118374 lncRNA upstream 34664 1766809 ~ 1771032 (+) True G105111
TU118368 lncRNA upstream 48499 1756381 ~ 1757197 (+) True G105107
TU118346 lncRNA upstream 83005 1721995 ~ 1722691 (+) False G105091
TU118267 lncRNA downstream 840 1806903 ~ 1807667 (+) False G105033
TU118268 lncRNA downstream 840 1806903 ~ 1807667 (+) False G105033
TU118270 lncRNA downstream 840 1806903 ~ 1807667 (+) False G105033
TU118271 lncRNA downstream 840 1806903 ~ 1807667 (+) True G105033
TU118380 lncRNA downstream 4013 1810076 ~ 1810305 (+) True G105115
XM_036935139.1 mRNA upstream 10758 1745298 ~ 1794938 (+) False LOC110514512
XM_036935148.1 mRNA upstream 10758 1745298 ~ 1794938 (+) True LOC110514512
XM_021594953.2 mRNA upstream 98021 1704889 ~ 1707675 (+) False tmem42a
XR_005034588.1 mRNA upstream 98021 1704889 ~ 1707675 (+) True tmem42a
XM_036935053.1 mRNA upstream 107327 1683561 ~ 1698369 (+) True gpd1l
XM_036935153.1 mRNA downstream 10745 1816808 ~ 1853570 (+) True slc6a3
XM_036935163.1 mRNA downstream 59302 1865365 ~ 1901448 (+) False LOC110511503
XM_036935165.1 mRNA downstream 59302 1865365 ~ 1901448 (+) False LOC110511503
XM_036935173.1 mRNA downstream 59302 1865365 ~ 1901448 (+) False LOC110511503
XM_036935178.1 mRNA downstream 59302 1865365 ~ 1901448 (+) False LOC110511503
TU118283 other upstream 95139 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 105265 1699073 ~ 1700431 (+) True G105036
TU118057 other upstream 452833 1309278 ~ 1352863 (+) True tgfbr2b
TU117843 other upstream 651947 1153061 ~ 1153749 (+) True G104761
TU116939 other upstream 933181 860506 ~ 872515 (+) True cmc1
TU119728 other downstream 714653 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 911898 2717961 ~ 2718525 (+) True G106122
TU120020 other downstream 1168760 2974823 ~ 3039475 (+) True G106240
TU120034 other downstream 1400734 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 1561142 3367205 ~ 3425955 (+) False mboat1

Expression Profile