RNA id: TU119904


Basic Information

Item Value
RNA id TU119904
length 213
lncRNA type intronic
GC content 0.48
exon number 2
gene id G106164
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2785613 ~ 2785963 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTCTGAGCAGAGTGAACAGGTACAACAGGCATGGTaatctagagagggagagagacaggaagttgATGTGTCTGAGCAGAGTGAACAGGTACAACAGGCATGGTaatctagagagggagagagacaggaagttgATGTGTCTGAGCAGAGTGAACAGGTACAACAGGCATGGTaatctagagagggagagagacaggaagttgATGTGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119891 lncRNA upstream 12999 2771726 ~ 2772614 (+) True G106152
TU119890 lncRNA upstream 15129 2769985 ~ 2770484 (+) True G106151
TU119880 lncRNA upstream 28814 2756008 ~ 2756799 (+) False G106143
TU119881 lncRNA upstream 28814 2756316 ~ 2756799 (+) False G106143
TU119882 lncRNA upstream 28947 2756316 ~ 2756666 (+) True G106143
TU119910 lncRNA downstream 25868 2811831 ~ 2812589 (+) True G106170
TU119939 lncRNA downstream 86359 2872322 ~ 2872918 (+) True G106194
TU119998 lncRNA downstream 155183 2941146 ~ 2941553 (+) True G106224
TU120004 lncRNA downstream 161586 2947549 ~ 2949704 (+) True G106229
TU120017 lncRNA downstream 184371 2970334 ~ 2971579 (+) False G106238
XM_036961507.1 mRNA upstream 364992 2418186 ~ 2420621 (+) True LOC118944030
XM_036961504.1 mRNA upstream 607617 2166121 ~ 2177996 (+) True LOC118944029
XM_036935200.1 mRNA upstream 665158 2116553 ~ 2120455 (+) True LOC110516539
XM_036935178.1 mRNA upstream 884165 1865365 ~ 1901448 (+) False LOC110511503
XR_005034608.1 mRNA downstream 192273 2978236 ~ 2978524 (+) True LOC118937340
XR_005034604.1 mRNA downstream 192823 2978786 ~ 2980193 (+) False LOC118937337
XR_005034605.1 mRNA downstream 192850 2978813 ~ 2980193 (+) False LOC118937337
XR_005034606.1 mRNA downstream 192866 2978829 ~ 2980193 (+) False LOC118937337
XR_005034607.1 mRNA downstream 193940 2979903 ~ 2980193 (+) True LOC118937337
TU119854 other upstream 67088 2717961 ~ 2718525 (+) True G106122
TU119728 other upstream 257641 2520716 ~ 2527972 (+) True G106019
TU118283 other upstream 1075056 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 1085182 1699073 ~ 1700431 (+) True G105036
TU118057 other upstream 1432750 1309278 ~ 1352863 (+) True tgfbr2b
TU120020 other downstream 188860 2974823 ~ 3039475 (+) True G106240
TU120034 other downstream 420834 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 581242 3367205 ~ 3425955 (+) False mboat1
TU120313 other downstream 581242 3367205 ~ 3487129 (+) False mboat1
TU120329 other downstream 581242 3367205 ~ 3487129 (+) False mboat1

Expression Profile