RNA id: TU119998


Basic Information

Item Value
RNA id TU119998
length 330
lncRNA type intronic
GC content 0.35
exon number 2
gene id G106224
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2941146 ~ 2941553 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCTATAACATTAACACTAGACTCAGGTTGCTGGTCCATATCTATAACATTAACACTAGACTCAGGTTACTGGACCATATCTATAACATTAACACTAGACTCAGGTTACTGGTCCATATCTATAACATTAACACTAGACTCAGGTTACTGGACCATATCTATAACATTAACACTAGACTCAGGTTACTGGTCCATATCTATAACATTAACACTAGACTcaggttactggtctatatctataacATTAACACTAGACTCTGGTTACCTGGACCATATCTATAACATTAACACTAGACTCAGGTTACTGGACCATATCTATAACATTAACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119939 lncRNA upstream 68228 2872322 ~ 2872918 (+) True G106194
TU119910 lncRNA upstream 128557 2811831 ~ 2812589 (+) True G106170
TU119904 lncRNA upstream 155183 2785613 ~ 2785963 (+) True G106164
TU119891 lncRNA upstream 168532 2771726 ~ 2772614 (+) True G106152
TU119890 lncRNA upstream 170662 2769985 ~ 2770484 (+) True G106151
TU120004 lncRNA downstream 5996 2947549 ~ 2949704 (+) True G106229
TU120017 lncRNA downstream 28781 2970334 ~ 2971579 (+) False G106238
TU120016 lncRNA downstream 29300 2970853 ~ 2971579 (+) True G106238
TU120023 lncRNA downstream 37843 2979396 ~ 2980334 (+) True G106243
TU120027 lncRNA downstream 46594 2988147 ~ 2989181 (+) True G106247
XM_036961507.1 mRNA upstream 520525 2418186 ~ 2420621 (+) True LOC118944030
XM_036961504.1 mRNA upstream 763150 2166121 ~ 2177996 (+) True LOC118944029
XM_036935200.1 mRNA upstream 820691 2116553 ~ 2120455 (+) True LOC110516539
XM_036935178.1 mRNA upstream 1039698 1865365 ~ 1901448 (+) False LOC110511503
XR_005034608.1 mRNA downstream 36683 2978236 ~ 2978524 (+) True LOC118937340
XR_005034604.1 mRNA downstream 37233 2978786 ~ 2980193 (+) False LOC118937337
XR_005034605.1 mRNA downstream 37260 2978813 ~ 2980193 (+) False LOC118937337
XR_005034606.1 mRNA downstream 37276 2978829 ~ 2980193 (+) False LOC118937337
XR_005034607.1 mRNA downstream 38350 2979903 ~ 2980193 (+) True LOC118937337
TU119854 other upstream 222621 2717961 ~ 2718525 (+) True G106122
TU119728 other upstream 413174 2520716 ~ 2527972 (+) True G106019
TU118283 other upstream 1230589 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 1240715 1699073 ~ 1700431 (+) True G105036
TU118057 other upstream 1588283 1309278 ~ 1352863 (+) True tgfbr2b
TU120020 other downstream 33270 2974823 ~ 3039475 (+) True G106240
TU120034 other downstream 265244 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 425652 3367205 ~ 3425955 (+) False mboat1
TU120313 other downstream 425652 3367205 ~ 3487129 (+) False mboat1
TU120329 other downstream 425652 3367205 ~ 3487129 (+) False mboat1

Expression Profile