RNA id: TU120004


Basic Information

Item Value
RNA id TU120004
length 405
lncRNA type intronic
GC content 0.36
exon number 2
gene id G106229
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2947549 ~ 2949704 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATGTCTCCATtagggttatagaggtagtatagtatatatgtctccattagggttatagaggtagtatagtctatatgtctccattagggttatagaggtagtatagtctatatgtctccattagggttatagaggtagtatagtctatatgtctccattagggttatagaggtagtatagtctatatgtctccattagggttatagaggtagtatagtCTATAGCTGTATGTCTCCATtagggttatagaggtagtatagtCTGTATGTCTCCATTAGGATTATAGAGGTAGTGTAGTCTACAGCTGTATGTCTCCATtagggttatagaggtagtatagtctatatgtctccattagggttatagaggtagtatagtctatatgtctccattagggttataga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119998 lncRNA upstream 5996 2941146 ~ 2941553 (+) True G106224
TU119939 lncRNA upstream 74631 2872322 ~ 2872918 (+) True G106194
TU119910 lncRNA upstream 134960 2811831 ~ 2812589 (+) True G106170
TU119904 lncRNA upstream 161586 2785613 ~ 2785963 (+) True G106164
TU119891 lncRNA upstream 174935 2771726 ~ 2772614 (+) True G106152
TU120017 lncRNA downstream 20630 2970334 ~ 2971579 (+) False G106238
TU120016 lncRNA downstream 21149 2970853 ~ 2971579 (+) True G106238
TU120023 lncRNA downstream 29692 2979396 ~ 2980334 (+) True G106243
TU120027 lncRNA downstream 38443 2988147 ~ 2989181 (+) True G106247
TU120032 lncRNA downstream 55360 3005064 ~ 3005325 (+) True G106252
XM_036961507.1 mRNA upstream 526928 2418186 ~ 2420621 (+) True LOC118944030
XM_036961504.1 mRNA upstream 769553 2166121 ~ 2177996 (+) True LOC118944029
XM_036935200.1 mRNA upstream 827094 2116553 ~ 2120455 (+) True LOC110516539
XM_036935178.1 mRNA upstream 1046101 1865365 ~ 1901448 (+) False LOC110511503
XR_005034608.1 mRNA downstream 28532 2978236 ~ 2978524 (+) True LOC118937340
XR_005034604.1 mRNA downstream 29082 2978786 ~ 2980193 (+) False LOC118937337
XR_005034605.1 mRNA downstream 29109 2978813 ~ 2980193 (+) False LOC118937337
XR_005034606.1 mRNA downstream 29125 2978829 ~ 2980193 (+) False LOC118937337
XR_005034607.1 mRNA downstream 30199 2979903 ~ 2980193 (+) True LOC118937337
TU119854 other upstream 229024 2717961 ~ 2718525 (+) True G106122
TU119728 other upstream 419577 2520716 ~ 2527972 (+) True G106019
TU118283 other upstream 1236992 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 1247118 1699073 ~ 1700431 (+) True G105036
TU118057 other upstream 1594686 1309278 ~ 1352863 (+) True tgfbr2b
TU120020 other downstream 25119 2974823 ~ 3039475 (+) True G106240
TU120034 other downstream 257093 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 417501 3367205 ~ 3425955 (+) False mboat1
TU120313 other downstream 417501 3367205 ~ 3487129 (+) False mboat1
TU120329 other downstream 417501 3367205 ~ 3487129 (+) False mboat1

Expression Profile