RNA id: TU120017


Basic Information

Item Value
RNA id TU120017
length 1086
lncRNA type intronic
GC content 0.52
exon number 2
gene id G106238
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2970334 ~ 2971579 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgagagagagagggagagaaaccacaCTTCCTGGTGTCATAATCTACTCTCCAGCCAGGAGAATGATACAGGGAAAGGTCAAGGGTCAGGAGAGGCATGGAGACAAGTGTCAGAGGGCAGGAAACCAGGGAAGGAGTGTGGTGAACAGAGCGTGGCCAGTGAGAGAAACTAGGGAAGGAGTGTGGTGAACAGAGCGTGGCCAGTGAGAGAAACTAGGGAAGGAGTGTGGTGAACAGAGTGTGGCCTGTGAGAGAAACTAGGGAAGGAGTGTGGTGAACAGAGTGGCCTGTGAGAGAAACTAGGGAAGGAGTGTGGTGAACAGAGTGGCCTGTGAGAGAAACTAGGGAAGGAGTGTGGTGAACAGAGCGTGGCCTGTGAGAGAAACTAGGGAAGGAGTGTGGTGAACAGAGTGGCCTGTGAGAGAAACTAGGGAAGGAGTGTGGTGAACAGAGTGGCCTGTGAGAGAAACTAGGGAAGGAGTGTGGTGAACAGAGTGGCCTGTGAGAGAAACTAGGGAAGGAGTGTGGTGAACAGAGTGTGGCCTGTGAGAGAAACAATCTACATGTCTGTCACCCAGGCTATAATACCATCTACATGTCTGTCACCCAGGCTATAATACCATCTACATGTCTGTGAGCCATGCTATAATACCATCTACATGTCTGTGAGCCATGCTATAATACCATCTACATGTCTGTGAGCCATGCTATAATACCATCTACATGTTTGTGACCCAGGCTATAATACCATCTACATGTTTGTGAGCCATGCTATAATACCATCTACATGTCTGTGAGCCATGCTATAATACCATCTACATGTTTGTGGAGTAATGTGGGTACTCACACTATAACCATGGAAAGGAAACTGTCTTTCAGCCAGGCAGGACACACGAGGGGAGAGGACGGTGTGAGGACACTGGAGGGGAGAGGACGGCGTGAGGACACTGGAGGGGAGAGGACGGTGTGAGGACACTGGAGGGGAGAGGACGGTGTGAGGACACTGGAGGGGAGAGGACGGTGTGAGGACACTGGAGGGGAGAGGACGGTGTGAGGACACTGGAGGGGAGAGGACGGTGTGAGGac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120004 lncRNA upstream 20630 2947549 ~ 2949704 (+) True G106229
TU119998 lncRNA upstream 28781 2941146 ~ 2941553 (+) True G106224
TU119939 lncRNA upstream 97416 2872322 ~ 2872918 (+) True G106194
TU119910 lncRNA upstream 157745 2811831 ~ 2812589 (+) True G106170
TU119904 lncRNA upstream 184371 2785613 ~ 2785963 (+) True G106164
TU120023 lncRNA downstream 7817 2979396 ~ 2980334 (+) True G106243
TU120027 lncRNA downstream 16568 2988147 ~ 2989181 (+) True G106247
TU120032 lncRNA downstream 33485 3005064 ~ 3005325 (+) True G106252
TU120033 lncRNA downstream 34733 3006312 ~ 3127725 (+) False G106253
TU120046 lncRNA downstream 53554 3025133 ~ 3025905 (+) True G106260
XM_036961507.1 mRNA upstream 549713 2418186 ~ 2420621 (+) True LOC118944030
XM_036961504.1 mRNA upstream 792338 2166121 ~ 2177996 (+) True LOC118944029
XM_036935200.1 mRNA upstream 849879 2116553 ~ 2120455 (+) True LOC110516539
XM_036935178.1 mRNA upstream 1068886 1865365 ~ 1901448 (+) False LOC110511503
XR_005034608.1 mRNA downstream 6657 2978236 ~ 2978524 (+) True LOC118937340
XR_005034604.1 mRNA downstream 7207 2978786 ~ 2980193 (+) False LOC118937337
XR_005034605.1 mRNA downstream 7234 2978813 ~ 2980193 (+) False LOC118937337
XR_005034606.1 mRNA downstream 7250 2978829 ~ 2980193 (+) False LOC118937337
XR_005034607.1 mRNA downstream 8324 2979903 ~ 2980193 (+) True LOC118937337
TU119854 other upstream 251809 2717961 ~ 2718525 (+) True G106122
TU119728 other upstream 442362 2520716 ~ 2527972 (+) True G106019
TU118283 other upstream 1259777 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 1269903 1699073 ~ 1700431 (+) True G105036
TU118057 other upstream 1617471 1309278 ~ 1352863 (+) True tgfbr2b
TU120020 other downstream 3244 2974823 ~ 3039475 (+) True G106240
TU120034 other downstream 235218 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 395626 3367205 ~ 3425955 (+) False mboat1
TU120313 other downstream 395626 3367205 ~ 3487129 (+) False mboat1
TU120329 other downstream 395626 3367205 ~ 3487129 (+) False mboat1

Expression Profile