RNA id: TU120814


Basic Information

Item Value
RNA id TU120814
length 1170
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G106727
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3992104 ~ 3993273 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taaccggccgtgactgggaggtccgtggggcgacgcacaattggcctagcgtcgtccgggttagggagggtttggccggtagggaaatccttgtctcatcgcgcaccagcgactcctgtggcgggccgggcgcagtgcgcgctaaccaaggttgccaggtgcacggtgtttcctccgacacattggtgcggctggcttccgggttggatggcgctgtgttaagaagcagtgcggcttggttgggttgtgtatcggaggacgcatgactttcaaccttcgtctctcctgagcccgtacgggagttgtagcgatgagacaagatagtagctactaaacaattggataccatgaaattggggagaaaaaggggtaaaattcaacaacaaaaaactccctagtccttgcctatgacaagcatacccataacatgatccagccacaaccatgcttgaaaatatgaagagttgtattggattttccccaaacataatgatttgtattcaggacatacagtatatttctttgccacatttttagcagttttactttagtgccttactgcaaacaggatgcatgttttggaatatgttttattctgtacaggcttccttcttttcactctgtcatgtaggttagtattgtggagtaacgacaatgttgttgatccatcctcagttttatcctgtcacagccattaaactctgtaactgttttaaagtgacCACCAACCTCATGGTGAAAtacctgagcggtttccttcctctccggcaactgagttagacaggacacctgcatctttgtagtgactgggtgttttgatacaccatccaaagtataattaataacttcaccatgctcaaagggacattcaatgtctgcttttttacccatctaccaataggtgcccttctttgcgaggcatcgAAAAACcgccctggtctttgtggttgaatctatttttaaattcactgctcgattgaAGGACCGTATAGATAATTGTATGCGTGGTGtccagagatgaggtagtcattcaaaaatcacgttaaacactattattgcacacagagtgagtccacacaacttattatgtgacttgttaagcacatttttactcctgaacttttttaggcttgccataacaaaggagttaaATACGtattgattcaagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120834 lncRNA upstream 22547 3968213 ~ 3969557 (+) False G106744
TU120833 lncRNA upstream 22637 3968704 ~ 3969467 (+) True G106744
TU120830 lncRNA upstream 23444 3967602 ~ 3968660 (+) True G106743
TU120821 lncRNA upstream 31313 3960273 ~ 3960791 (+) True G106734
TU120806 lncRNA upstream 55635 3934994 ~ 3936469 (+) True G106721
TU120848 lncRNA downstream 60 3993333 ~ 3993610 (+) True G106755
TU120854 lncRNA downstream 14664 4007937 ~ 4008423 (+) True G106761
TU120858 lncRNA downstream 18866 4012139 ~ 4012539 (+) True G106764
TU120869 lncRNA downstream 32319 4025592 ~ 4025852 (+) True G106773
TU120888 lncRNA downstream 53434 4046707 ~ 4047624 (+) True G106790
XM_036935245.1 mRNA upstream 570005 3407187 ~ 3422099 (+) False mboat1
XM_036935236.1 mRNA upstream 570005 3407190 ~ 3422099 (+) False mboat1
XR_005034605.1 mRNA upstream 1011911 2978813 ~ 2980193 (+) False LOC118937337
XM_036935433.1 mRNA downstream 57510 4050783 ~ 4065607 (+) True colec10
XM_036935438.1 mRNA downstream 72719 4065992 ~ 4085680 (+) True mal2
XM_036935442.1 mRNA downstream 119849 4113122 ~ 4119742 (+) True LOC110507036
XM_036935488.1 mRNA downstream 243607 4236880 ~ 4302536 (+) False deptor
XM_036935491.1 mRNA downstream 243611 4236884 ~ 4302536 (+) False deptor
TU120569 other upstream 191752 3639434 ~ 3800352 (+) True G106575
TU120618 other upstream 314254 3676265 ~ 3677850 (+) False G106595
TU120313 other upstream 504975 3367205 ~ 3487129 (+) False mboat1
TU120329 other upstream 504975 3367205 ~ 3487129 (+) False mboat1
TU120299 other upstream 566149 3367205 ~ 3425955 (+) False mboat1
TU120871 other downstream 33802 4027075 ~ 4027594 (+) True G106775
TU120937 other downstream 144540 4137813 ~ 4138496 (+) False G106814
TU120940 other downstream 144540 4137813 ~ 4138496 (+) True G106814
TU122634 other downstream 750895 4744168 ~ 4745586 (+) True G107922
TU122673 other downstream 815466 4808739 ~ 4811575 (+) True G107955

Expression Profile