RNA id: TU120915


Basic Information

Item Value
RNA id TU120915
length 1258
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id G106806
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4186818 ~ 4189033 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGGAAGTAGCTCTGGAAGCTGATGAAGGTGTTGGTCTTGACGATGTTTGGACAGCTCTTACAGCAGAACATTCTGGTGAACAGAGACTTCATGGCTGGAGGACCGGTCCAGGTGCTCATCATGGAGTTGGCGATCTATGAATGTTTAAAACAGGAAACACATGATACAGCTTCCTCCTCCTGTTCTATCTGAGCTGATGTGTGACAGCtagctctcctcctcctgttctatcTGAGCTGATGTGTGACAGCTAGCTATCCTCCTCCTGTTCTATCTTAGCTGATGTGTGACAGCTAGCTCTCCTCCTGTTCTATCTGAGCTGATGTGTGACAGCTAGCTATCCTCCTCCTGTTCTATCTTAGCTGATGTGTGACAGCtagctctcctcctcctgttctatcTGAGCTGATGTGTGACAGCtagctctcctcctcctgttctatcTGAGCTGATGTGTGACAGCtagctctcctcctcctgttctatcTGAGCTGATGTGTGACAGCTAGCTCTCCTCCTGTTCTATCTGAGCTGATGTGTGACAGCtagctctcctcctcctgttctatcTGAGCTGATGTGTGACAGCTAGCTCTCCTCCTGTTCTATCTGAGCTGATGTGTGACAGCtagctctcctcctcctgttctatcTGAGCTGATGTGTGACAGCTAGCTATCCTGGTGAACAGGGACGTCACAGAGCAGTGGAGTTCGCTATGTAGACACAGAAGATACTAAATAATAGACGTATTAGCTAGTAATCTAACTAGGATGACACATGACACTCTGAAGGTggtttcctggacaaaacgttgtAATATTCATTTGAAAGTTAACTGCAAGGGGACAAGAGAGTGCAACTATGATTAGATTTTCTAGAGTTCAGAACAATTGGCTTCTAGCAGACTGGCTTCTAGCCTGTTACATTAGGAAGTAACAGAGCAgagggtctccctgctctctctcagcaGGATGTTAGAGAGAAGCACAGAGCCGAgggtctccctgctctctctcagcaggatgttagagagaaggacagagccgagggtctccctgctctctctcagcaggatattagagagaaggacagagctgagggtctccctgctctctctcagcaggatattagagagaaggacagagccgagggtctccctgctctctctcagcaggatgttagagagaaggacagagccgagggtctccctgctctctctcagcaggatattagagagaaggacagagctgAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120968 lncRNA upstream 18501 4167720 ~ 4168317 (+) True G106831
TU120930 lncRNA upstream 48322 4137813 ~ 4138496 (+) False G106814
TU120939 lncRNA upstream 48322 4137813 ~ 4138496 (+) False G106814
TU120895 lncRNA upstream 89949 4095696 ~ 4096869 (+) True G106797
TU120893 lncRNA upstream 103326 4077278 ~ 4083492 (+) True G106795
TU120978 lncRNA downstream 16407 4205440 ~ 4206012 (+) True G106841
TU120979 lncRNA downstream 17002 4206035 ~ 4206534 (+) True G106842
TU120991 lncRNA downstream 29342 4218375 ~ 4218891 (+) True G106849
TU120993 lncRNA downstream 30673 4219706 ~ 4220363 (+) True G106851
TU120994 lncRNA downstream 32501 4221534 ~ 4222247 (+) True G106852
XM_036935442.1 mRNA upstream 67076 4113122 ~ 4119742 (+) True LOC110507036
XM_036935438.1 mRNA upstream 101138 4065992 ~ 4085680 (+) True mal2
XM_036935433.1 mRNA upstream 121211 4050783 ~ 4065607 (+) True colec10
XM_036935245.1 mRNA upstream 764719 3407187 ~ 3422099 (+) False mboat1
XM_036935488.1 mRNA downstream 47847 4236880 ~ 4302536 (+) False deptor
XM_036935491.1 mRNA downstream 47851 4236884 ~ 4302536 (+) False deptor
XM_036935497.1 mRNA downstream 48018 4237051 ~ 4302536 (+) False deptor
XM_036935484.1 mRNA downstream 48022 4237055 ~ 4302536 (+) False deptor
XM_036935521.1 mRNA downstream 138950 4327983 ~ 4538057 (+) False col14a1a
TU120937 other upstream 48322 4137813 ~ 4138496 (+) False G106814
TU120940 other upstream 48322 4137813 ~ 4138496 (+) True G106814
TU120871 other upstream 159224 4027075 ~ 4027594 (+) True G106775
TU120569 other upstream 386466 3639434 ~ 3800352 (+) True G106575
TU122634 other downstream 555135 4744168 ~ 4745586 (+) True G107922
TU122673 other downstream 619706 4808739 ~ 4811575 (+) True G107955
TU122792 other downstream 668878 4857911 ~ 4858274 (+) True G108048
TU123045 other downstream 947323 5136356 ~ 5136992 (+) True G108280
TU123151 other downstream 1107146 5296179 ~ 5299933 (+) True G108354

Expression Profile