RNA id: TU120994


Basic Information

Item Value
RNA id TU120994
length 526
lncRNA type intronic
GC content 0.60
exon number 3
gene id G106852
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4221534 ~ 4222247 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGATATAGCCTACAGCTGGGTTCTACAGATACAACAGGGATATAGCCTACAGCTAGGTTCTACAGATACAACAGGGATATAGCCTACAGCTAGGTTCTACAGATACAACAGGGATATAGCCTACAGCTAGGTTCTACAGATACAACAACAGGGATATAGCCTACAGCTAGGTTCTACAGATACAACAGGGATATAGCCTACAGCTAGGTtctacacatacaacaacagggATATAGCCTACAGCTAGGTtctacacatacaacaacagggATATAGCCTACAGCTAGGTTCTACAGATACAACAACAGGGATATAGCCTACAGCTAGGTTCTACAGATACAACAACAGGGATATAGCCTACAGCTAGGTtctacacatacaacaacagggATATAGCCTACAGCTAGGTTCTACAGATACAACAGGGATATAGCCTACAGCTGGGTTCTACAGATACAACAGGGATATAGCCTACAGCTAGGTTCTACAGATACAACAGGGATATAGCCTACAGCTAGGTTCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120993 lncRNA upstream 1171 4219706 ~ 4220363 (+) True G106851
TU120991 lncRNA upstream 2643 4218375 ~ 4218891 (+) True G106849
TU120979 lncRNA upstream 15000 4206035 ~ 4206534 (+) True G106842
TU120978 lncRNA upstream 15522 4205440 ~ 4206012 (+) True G106841
TU120915 lncRNA upstream 32501 4186818 ~ 4189033 (+) True G106806
TU120997 lncRNA downstream 211 4222458 ~ 4223131 (+) True G106855
TU120999 lncRNA downstream 1869 4224116 ~ 4224594 (+) True G106857
TU121001 lncRNA downstream 4017 4226264 ~ 4226569 (+) True G106859
TU121002 lncRNA downstream 5039 4227286 ~ 4232470 (+) True G106860
TU121008 lncRNA downstream 24492 4246739 ~ 4247242 (+) True G106864
XM_036935442.1 mRNA upstream 101792 4113122 ~ 4119742 (+) True LOC110507036
XM_036935438.1 mRNA upstream 135854 4065992 ~ 4085680 (+) True mal2
XM_036935433.1 mRNA upstream 155927 4050783 ~ 4065607 (+) True colec10
XM_036935245.1 mRNA upstream 799435 3407187 ~ 3422099 (+) False mboat1
XM_036935488.1 mRNA downstream 14633 4236880 ~ 4302536 (+) False deptor
XM_036935491.1 mRNA downstream 14637 4236884 ~ 4302536 (+) False deptor
XM_036935497.1 mRNA downstream 14804 4237051 ~ 4302536 (+) False deptor
XM_036935484.1 mRNA downstream 14808 4237055 ~ 4302536 (+) False deptor
XM_036935521.1 mRNA downstream 105736 4327983 ~ 4538057 (+) False col14a1a
TU120937 other upstream 83038 4137813 ~ 4138496 (+) False G106814
TU120940 other upstream 83038 4137813 ~ 4138496 (+) True G106814
TU120871 other upstream 193940 4027075 ~ 4027594 (+) True G106775
TU120569 other upstream 421182 3639434 ~ 3800352 (+) True G106575
TU122634 other downstream 521921 4744168 ~ 4745586 (+) True G107922
TU122673 other downstream 586492 4808739 ~ 4811575 (+) True G107955
TU122792 other downstream 635664 4857911 ~ 4858274 (+) True G108048
TU123045 other downstream 914109 5136356 ~ 5136992 (+) True G108280
TU123151 other downstream 1073932 5296179 ~ 5299933 (+) True G108354

Expression Profile