RNA id: TU121018


Basic Information

Item Value
RNA id TU121018
length 259
lncRNA type intronic
GC content 0.44
exon number 2
gene id G106869
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4254102 ~ 4254936 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTACAGTGGTAATTAAACATGGGGGAAGTCTACAGTACACAGTGGTGATTAAACATGGGGGAAGTCTACAGTGGTGATTAAACATGGGGGAAGTCTACAGTGGTGATTAAACATGGGGGaagtctacagtacagtggtaatTAAACATGGGGGAAGTCTACAGTGGTAATTAAACATGGGGGAAGTCTACAGTACACAGTGGTGATTAAACATGGGGGAAGTCTACAGTGGTGATTAAACATGGGGGAAGTCTACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121016 lncRNA upstream 925 4252917 ~ 4253177 (+) True G106868
TU121008 lncRNA upstream 6860 4246739 ~ 4247242 (+) True G106864
TU121002 lncRNA upstream 21632 4227286 ~ 4232470 (+) True G106860
TU121001 lncRNA upstream 27533 4226264 ~ 4226569 (+) True G106859
TU120999 lncRNA upstream 29508 4224116 ~ 4224594 (+) True G106857
TU120905 lncRNA downstream 42951 4297887 ~ 4300243 (+) False deptor
TU120907 lncRNA downstream 42951 4297887 ~ 4300243 (+) False deptor
TU120909 lncRNA downstream 42951 4297887 ~ 4300243 (+) False deptor
TU120911 lncRNA downstream 42951 4297887 ~ 4300243 (+) False deptor
TU120908 lncRNA downstream 44882 4299818 ~ 4301991 (+) False deptor
XM_036935442.1 mRNA upstream 134360 4113122 ~ 4119742 (+) True LOC110507036
XM_036935438.1 mRNA upstream 168422 4065992 ~ 4085680 (+) True mal2
XM_036935433.1 mRNA upstream 188495 4050783 ~ 4065607 (+) True colec10
XM_036935245.1 mRNA upstream 832003 3407187 ~ 3422099 (+) False mboat1
XM_036935521.1 mRNA downstream 73047 4327983 ~ 4538057 (+) False col14a1a
XM_036935515.1 mRNA downstream 73050 4327986 ~ 4571003 (+) False col14a1a
XM_036935520.1 mRNA downstream 73051 4327987 ~ 4569652 (+) False col14a1a
XM_036935508.1 mRNA downstream 73054 4327990 ~ 4572381 (+) False col14a1a
XM_036935511.1 mRNA downstream 73054 4327990 ~ 4572381 (+) True col14a1a
TU120937 other upstream 115606 4137813 ~ 4138496 (+) False G106814
TU120940 other upstream 115606 4137813 ~ 4138496 (+) True G106814
TU120871 other upstream 226508 4027075 ~ 4027594 (+) True G106775
TU120569 other upstream 453750 3639434 ~ 3800352 (+) True G106575
TU122634 other downstream 489232 4744168 ~ 4745586 (+) True G107922
TU122673 other downstream 553803 4808739 ~ 4811575 (+) True G107955
TU122792 other downstream 602975 4857911 ~ 4858274 (+) True G108048
TU123045 other downstream 881420 5136356 ~ 5136992 (+) True G108280
TU123151 other downstream 1041243 5296179 ~ 5299933 (+) True G108354

Expression Profile