RNA id: TU122584


Basic Information

Item Value
RNA id TU122584
length 1350
lncRNA type antisense_over
GC content 0.46
exon number 3
gene id G107896
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4662524 ~ 4668610 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCAGAAATATGTCATTTATGTGCATCATTAACAGAGTTAAAATAAAACTAAGCCTTGAATTATAATAGCTGCCAAAGGCGTAGGACAATTCAAATTTTCAAGCAGCCTTCACAATCTTTTTCACCGTAACTTTTTCATTTAAGTTAACAGTAATCGCTGAATAATTTGCAGACAGAGATTGCCGAATAAACAATTAGCGTAGGATGGATGGATGCTAGATAGATCATACTTCCAGTATGTTTTTTAGTACCAAAACAATAGATTATTGTTCTTGTACAGCTTAACGACGATTTGAACAAAACAATTTCTTCTGTTGTAACTGATCTCTCGCTATGATGTCATCGGTAATGCATGTGTTTCTATAAATACACAAAACAACTCAttccagtttttttttaaacatgatcCATTCATTTTGAGCTGTTTGTGTGGACTTTGAATCAGGGTAGATCCTGTGTCTAGTTCACTGCACATCACAGTCCTTGTTCTCGTAGTTCAGTTATCAGCCATGTCCTCCTCTGTTCTGTACACTCCACTGTGGAACTCCGGGACACTCCACTCTAGAAGTCTGGAACTGTTCAGTCCTTGTGGTCCGTTGGTGGTAAACAGAACCTTTATGCTACCAGGCCGAGTCTGGCGATCTTTGCAGAGAGGAATGAGTGGAGGATGAAGACGATAGGCTTTGGGCACGAGTGGAGGTCCAGCTGCTGAacAATTTCACCCTCTTTTCCACTGAAATCCAGGAAGAGCATCCTGACCCCGTCGTCGGAGGACATCTTGAGGCGTTCGAAGGGGTAGCAGAGGAGAGGTTTGGCTTGGTTCTGGTTCCCCTGGTCCACCTGGTCCTCCCCCTTCTGCTCAGCCAGGACAGAGAAGCCCTGCTCGTAGTGGATCACCAGCCTGCACTCCTGGCCCTTGTACACACAGCCTGGAACAGGACAATAGAATGGGGTAACTCCTGGCCCTTGTACACACATCCTGGAACAGGACAATAGAATGGGGTAACTCCTGGCCCTTGTACATAGAGCCTGAAACAGGACAATAGAATGGGGTAACTCCTGGCCCTTGTAAATACAGCCTGGAACAGGACAATAGAATGAGTAACTCCTGGCCCTTGTACACACAGCCTGGAACAGGACAATAGAATGGGTAACTCCTGGCCCTTGAACACACAGCCTGGAACAGGACAATATAATGAGTAACTCCTGGCCCTTGTACACACAGCCTGGAACAGGACAATAGAATGGGGTAACTCCTGGCCCTTGTACACACAGCCTGGAACAGGACAATAGAATGGGGTAACTCCTGGCCCTTGTACATACAGCCTGGAACAAGACAATAGAATGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122286 lncRNA upstream 14727 4646780 ~ 4647797 (+) True G107714
TU122278 lncRNA upstream 22088 4638476 ~ 4640436 (+) True G107709
TU122270 lncRNA upstream 46462 4615538 ~ 4616062 (+) True G107703
TU122264 lncRNA upstream 63011 4596186 ~ 4599513 (+) True G107697
TU122260 lncRNA upstream 80847 4581316 ~ 4581677 (+) True G107693
TU122586 lncRNA downstream 37589 4706199 ~ 4707474 (+) True G107898
TU122607 lncRNA downstream 41479 4710089 ~ 4710939 (+) True G107911
TU122611 lncRNA downstream 42934 4711544 ~ 4722290 (+) True G107912
TU122620 lncRNA downstream 63347 4731957 ~ 4733848 (+) True G107917
TU122623 lncRNA downstream 66636 4735246 ~ 4737254 (+) True LOC118937361
XM_036935527.1 mRNA upstream 7791 4602959 ~ 4654733 (+) False LOC110520696
XR_005034649.1 mRNA downstream 67047 4735657 ~ 4737279 (+) False LOC118937361
XR_005034652.1 mRNA downstream 67047 4735657 ~ 4737279 (+) False LOC118937361
XR_005034651.1 mRNA downstream 67047 4735657 ~ 4737280 (+) False LOC118937361
XR_005034655.1 mRNA downstream 67047 4735657 ~ 4737281 (+) False LOC118937361
XR_005034653.1 mRNA downstream 67047 4735657 ~ 4737282 (+) False LOC118937361
TU120937 other upstream 524028 4137813 ~ 4138496 (+) False G106814
TU120940 other upstream 524028 4137813 ~ 4138496 (+) True G106814
TU120871 other upstream 634930 4027075 ~ 4027594 (+) True G106775
TU120569 other upstream 862172 3639434 ~ 3800352 (+) True G106575
TU122634 other downstream 75558 4744168 ~ 4745586 (+) True G107922
TU122673 other downstream 140129 4808739 ~ 4811575 (+) True G107955
TU122792 other downstream 189301 4857911 ~ 4858274 (+) True G108048
TU123045 other downstream 467746 5136356 ~ 5136992 (+) True G108280
TU123151 other downstream 627569 5296179 ~ 5299933 (+) True G108354

Expression Profile