RNA id: TU122816


Basic Information

Item Value
RNA id TU122816
length 226
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G108070
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4887868 ~ 4888093 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attggaaaacctccctggtctttgtggttgaatctgtatttgaaattcactgttcaactgagggacctcacagttaaggtctgtgtatgtgtggggaacagagatgatgtagtcattcaaaaatcatgttaaaccaGTAGCTCTCAGCCAGtagagactgctgaggggaggacttcATCACAGCCTAACTACCAGTAGCTCTCAGCCAGtagagactgctgagggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122786 lncRNA upstream 37907 4849747 ~ 4849961 (+) True G108042
TU122775 lncRNA upstream 45519 4842072 ~ 4842349 (+) True G108031
TU122688 lncRNA upstream 47768 4839404 ~ 4840100 (+) True G107967
TU122686 lncRNA upstream 49930 4837383 ~ 4837938 (+) True G107965
TU122677 lncRNA upstream 67572 4819733 ~ 4820296 (+) True G107958
TU122817 lncRNA downstream 3 4888096 ~ 4888300 (+) True G108071
TU122832 lncRNA downstream 24961 4913054 ~ 4913353 (+) True G108084
TU122888 lncRNA downstream 63666 4951759 ~ 4952386 (+) True G108136
TU122891 lncRNA downstream 67355 4955448 ~ 4955782 (+) True G108139
TU122901 lncRNA downstream 75777 4963870 ~ 4964105 (+) True G108149
XR_005034656.1 mRNA upstream 150584 4735657 ~ 4737284 (+) False LOC118937361
XR_005034650.1 mRNA upstream 150585 4735657 ~ 4737283 (+) False LOC118937361
XR_005034653.1 mRNA upstream 150586 4735657 ~ 4737282 (+) False LOC118937361
XR_005034654.1 mRNA upstream 150586 4735657 ~ 4737282 (+) False LOC118937361
XR_005034655.1 mRNA upstream 150587 4735657 ~ 4737281 (+) False LOC118937361
XR_005034658.1 mRNA downstream 260008 5148101 ~ 5176987 (+) False LOC110506140
XM_036935645.1 mRNA downstream 260013 5148106 ~ 5176987 (+) True LOC110506140
XM_036935664.1 mRNA downstream 307838 5195931 ~ 5227041 (+) False tbc1d31
XM_036935658.1 mRNA downstream 307846 5195939 ~ 5227041 (+) True tbc1d31
XM_036935668.1 mRNA downstream 339964 5228057 ~ 5235894 (+) True LOC110520809
TU122792 other upstream 29594 4857911 ~ 4858274 (+) True G108048
TU122673 other upstream 76293 4808739 ~ 4811575 (+) True G107955
TU122634 other upstream 142282 4744168 ~ 4745586 (+) True G107922
TU120937 other upstream 749372 4137813 ~ 4138496 (+) False G106814
TU120940 other upstream 749372 4137813 ~ 4138496 (+) True G106814
TU123045 other downstream 248263 5136356 ~ 5136992 (+) True G108280
TU123151 other downstream 408086 5296179 ~ 5299933 (+) True G108354
TU123438 other downstream 618453 5506546 ~ 5542865 (+) True ptp4a3b
TU123443 other downstream 693200 5581293 ~ 5582450 (+) True LOC110506279
TU123575 other downstream 831872 5719965 ~ 5725579 (+) False G108682

Expression Profile