RNA id: TU123424


Basic Information

Item Value
RNA id TU123424
length 401
lncRNA type antisense_over
GC content 0.52
exon number 3
gene id G108567
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5459506 ~ 5460437 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTGTTGTCAGCAGCAACACAGGCAGTAGGGTAGACAGGACAGGGGTTATGAGGTTTGTTGTCAGCAGCAACACAGGCAgtaggcaggacaggacaggggttaTGAGGTTTGTTGTCAGCAGCAACACAGGCAGTAgggtagacaggacaggacaggggttaTGAGGTTTGTTGTCAGCAGCAACACAGGCAGTAgggtagacaggacaggacaggggttaTGAGGTTTGTTGTCAGCAGCAACACAGGCAGTAgggtagacaggacaggacaggggttaTGAGGTTTGTTGTCAGCAGCAACACAGGCAGTAGGGTAGACAGGACAGGGGTTATGAGGTTTGTTGTCAGCAGCAACACAGGCAGTAGGGTAGACAGGACAGGGATTATGAGGTCAGGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123396 lncRNA upstream 39725 5418398 ~ 5419781 (+) True G108543
TU123407 lncRNA upstream 57660 5401556 ~ 5401846 (+) True G108554
TU123395 lncRNA upstream 60142 5398911 ~ 5399364 (+) True tg
TU123404 lncRNA upstream 60912 5398337 ~ 5398594 (+) True G108551
TU123402 lncRNA upstream 67840 5391422 ~ 5391666 (+) True G108549
TU123461 lncRNA downstream 31554 5491991 ~ 5492744 (+) True G108598
TU123472 lncRNA downstream 48001 5508438 ~ 5509164 (+) True G108608
TU123480 lncRNA downstream 66267 5526704 ~ 5529066 (+) True G108613
TU123482 lncRNA downstream 69525 5529962 ~ 5532458 (+) True G108615
TU123483 lncRNA downstream 72550 5532987 ~ 5534119 (+) True G108616
XM_021598289.2 mRNA upstream 2376 5451499 ~ 5457130 (+) True ccn4b
XM_036961549.1 mRNA upstream 12306 5348252 ~ 5447200 (+) False tg
XM_036935752.1 mRNA upstream 109834 5321554 ~ 5349672 (+) False phf20l1
XM_036935926.1 mRNA downstream 20538 5480975 ~ 5542867 (+) False ptp4a3b
XM_036935931.1 mRNA downstream 46103 5506540 ~ 5542867 (+) False ptp4a3b
XM_036935869.1 mRNA downstream 82557 5542994 ~ 5572618 (+) False dync1i1
XM_036935874.1 mRNA downstream 82557 5542994 ~ 5572618 (+) False dync1i1
XM_036935879.1 mRNA downstream 82557 5542994 ~ 5572618 (+) False dync1i1
TU123151 other upstream 159573 5296179 ~ 5299933 (+) True G108354
TU123045 other upstream 322514 5136356 ~ 5136992 (+) True G108280
TU122792 other upstream 601232 4857911 ~ 4858274 (+) True G108048
TU122673 other upstream 647931 4808739 ~ 4811575 (+) True G107955
TU122634 other upstream 713920 4744168 ~ 4745586 (+) True G107922
TU123438 other downstream 46109 5506546 ~ 5542865 (+) True ptp4a3b
TU123443 other downstream 120856 5581293 ~ 5582450 (+) True LOC110506279
TU123575 other downstream 259528 5719965 ~ 5725579 (+) False G108682
TU123579 other downstream 259528 5719965 ~ 5725382 (+) True G108682
TU123616 other downstream 319777 5780214 ~ 5782644 (+) True G108702

Expression Profile