RNA id: TU123650


Basic Information

Item Value
RNA id TU123650
length 253
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G108730
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5898375 ~ 5898791 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggcagatacagtgcgggaaTTTGTCTTGGAAAGAAAAGTCCTCATtaaccacatttccatccacaGGTGTTATGCCAGTAACATCTACAGGTGTTATGCCAGTAAAGTCATAGCGTATCCATCCACAGGTGTTATGCCAGTAAAGTCATAGCGTATTCAAAAAGTGATGGAAAGAGGAAGTTTTTATACAATTTTACAAATGCCgacagaaaatgtgtttttcgACACGGTGGGTATTGTTTTGTTGGTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123648 lncRNA upstream 2316 5895808 ~ 5896059 (+) True G108728
TU123643 lncRNA upstream 11903 5886260 ~ 5886472 (+) True G108723
TU123523 lncRNA upstream 13242 5883094 ~ 5885133 (+) True G108647
TU123506 lncRNA upstream 16339 5881143 ~ 5882036 (+) True G108630
TU123642 lncRNA upstream 17909 5879937 ~ 5880466 (+) True G108722
TU123651 lncRNA downstream 933 5899724 ~ 5900018 (+) True G108731
TU123656 lncRNA downstream 12897 5911688 ~ 5911936 (+) True G108736
TU123672 lncRNA downstream 42214 5941005 ~ 5941256 (+) True G108752
TU123683 lncRNA downstream 44961 5943752 ~ 5944991 (+) True G108753
TU123524 lncRNA downstream 48720 5947511 ~ 5948341 (+) True G108648
XM_036936009.1 mRNA upstream 44201 5841517 ~ 5854174 (+) False LOC110505528
XM_036935966.1 mRNA upstream 58729 5812247 ~ 5839646 (+) True mylipb
XM_036935962.1 mRNA upstream 144528 5616004 ~ 5753847 (+) False jarid2a
XM_036935963.1 mRNA upstream 144528 5616004 ~ 5753847 (+) True jarid2a
XR_005034689.1 mRNA upstream 150279 5615996 ~ 5748096 (+) False jarid2a
XM_036936052.1 mRNA downstream 55190 5953981 ~ 5955445 (+) False LOC110505637
XR_005034712.1 mRNA downstream 77409 5976200 ~ 6002265 (+) False LOC110505679
XR_005034714.1 mRNA downstream 79475 5978266 ~ 5979890 (+) True LOC118937375
XR_005034713.1 mRNA downstream 100139 5998930 ~ 6002265 (+) False LOC110505679
XR_005034711.1 mRNA downstream 102431 6001222 ~ 6002265 (+) False LOC110505679
TU123616 other upstream 115731 5780214 ~ 5782644 (+) True G108702
TU123575 other upstream 172796 5719965 ~ 5725579 (+) False G108682
TU123579 other upstream 172993 5719965 ~ 5725382 (+) True G108682
TU123443 other upstream 315925 5581293 ~ 5582450 (+) True LOC110506279
TU123438 other upstream 355510 5506546 ~ 5542865 (+) True ptp4a3b
TU123653 other downstream 1720 5900511 ~ 5900950 (+) True G108733
TU123496 other downstream 55095 5953886 ~ 5958769 (+) False LOC110505637
TU123500 other downstream 55095 5953886 ~ 5958813 (+) False LOC110505637
TU123491 other downstream 55154 5953945 ~ 5958769 (+) False LOC110505637
TU123495 other downstream 55154 5953945 ~ 5958813 (+) False LOC110505637

Expression Profile