RNA id: TU123653


Basic Information

Item Value
RNA id TU123653
length 440
RNA type TUCP
GC content 0.46
exon number 1
gene id G108733
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5900511 ~ 5900950 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctgacttgaaacattgttaaaaGTGTCAGGGCCAGGGgactttctcatgatggaaaaatacagaagacAGGGCACATTCAGAGCGTGGGGTTGCAGAACAAgcagtcttttgttagataacaggagccaggtgcgagaTAACGGTATGGAGCATGAGAGCCTGGATGTTCTTCACAGCAACACTTACATCTATCAACagaagcgccaagaggcggggacccgcctgagcgcctgcaataggctgagcaagtttaaaccacgcccagcctctactgtgataggccaacagacgggttggaactgtctatcacagtataaagaatactgtttacatacatcttgtcagttctctgcttgccctgcgaggtgggacagagagcccgtatatacgaaaattgcatttaccacttattgcttagctaataaaaaatacatagta

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123651 lncRNA upstream 493 5899724 ~ 5900018 (+) True G108731
TU123650 lncRNA upstream 1720 5898375 ~ 5898791 (+) True G108730
TU123648 lncRNA upstream 4452 5895808 ~ 5896059 (+) True G108728
TU123643 lncRNA upstream 14039 5886260 ~ 5886472 (+) True G108723
TU123523 lncRNA upstream 15378 5883094 ~ 5885133 (+) True G108647
TU123656 lncRNA downstream 10738 5911688 ~ 5911936 (+) True G108736
TU123672 lncRNA downstream 40055 5941005 ~ 5941256 (+) True G108752
TU123683 lncRNA downstream 42802 5943752 ~ 5944991 (+) True G108753
TU123524 lncRNA downstream 46561 5947511 ~ 5948341 (+) True G108648
TU123503 lncRNA downstream 54753 5955703 ~ 5962125 (+) True G108627
XM_036936009.1 mRNA upstream 46337 5841517 ~ 5854174 (+) False LOC110505528
XM_036935966.1 mRNA upstream 60865 5812247 ~ 5839646 (+) True mylipb
XM_036935962.1 mRNA upstream 146664 5616004 ~ 5753847 (+) False jarid2a
XM_036935963.1 mRNA upstream 146664 5616004 ~ 5753847 (+) True jarid2a
XR_005034689.1 mRNA upstream 152415 5615996 ~ 5748096 (+) False jarid2a
XM_036936052.1 mRNA downstream 53031 5953981 ~ 5955445 (+) False LOC110505637
XR_005034712.1 mRNA downstream 75250 5976200 ~ 6002265 (+) False LOC110505679
XR_005034714.1 mRNA downstream 77316 5978266 ~ 5979890 (+) True LOC118937375
XR_005034713.1 mRNA downstream 97980 5998930 ~ 6002265 (+) False LOC110505679
XR_005034711.1 mRNA downstream 100272 6001222 ~ 6002265 (+) False LOC110505679
TU123616 other upstream 117867 5780214 ~ 5782644 (+) True G108702
TU123575 other upstream 174932 5719965 ~ 5725579 (+) False G108682
TU123579 other upstream 175129 5719965 ~ 5725382 (+) True G108682
TU123443 other upstream 318061 5581293 ~ 5582450 (+) True LOC110506279
TU123438 other upstream 357646 5506546 ~ 5542865 (+) True ptp4a3b
TU123496 other downstream 52936 5953886 ~ 5958769 (+) False LOC110505637
TU123500 other downstream 52936 5953886 ~ 5958813 (+) False LOC110505637
TU123491 other downstream 52995 5953945 ~ 5958769 (+) False LOC110505637
TU123495 other downstream 52995 5953945 ~ 5958813 (+) False LOC110505637
TU123497 other downstream 52995 5953945 ~ 5958769 (+) True LOC110505637

Expression Profile