RNA id: TU123656


Basic Information

Item Value
RNA id TU123656
length 249
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G108736
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5911688 ~ 5911936 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTCACAGCAACATTTCATAAAATAAATAGTTTCGTCATCCCATTCCCAGCCTGGCCGAAATGAACACCGTGCACTTCTACATACCACTAGGGCGCAGCACTGCTACCCTTATAGTGAAAGACGCAGAGCATTGGAAATACACTGACTAGCCTTCTGTACCAGATAGTATTATTGACTGTTCTTCACTCCAATCACAATGAATTCGACTATGGTCTTTAGTTCCAAACCCATCACTAATAGCCATATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123651 lncRNA upstream 11670 5899724 ~ 5900018 (+) True G108731
TU123650 lncRNA upstream 12897 5898375 ~ 5898791 (+) True G108730
TU123648 lncRNA upstream 15629 5895808 ~ 5896059 (+) True G108728
TU123643 lncRNA upstream 25216 5886260 ~ 5886472 (+) True G108723
TU123523 lncRNA upstream 26555 5883094 ~ 5885133 (+) True G108647
TU123672 lncRNA downstream 29069 5941005 ~ 5941256 (+) True G108752
TU123683 lncRNA downstream 31816 5943752 ~ 5944991 (+) True G108753
TU123524 lncRNA downstream 35575 5947511 ~ 5948341 (+) True G108648
TU123503 lncRNA downstream 43767 5955703 ~ 5962125 (+) True G108627
TU123691 lncRNA downstream 71340 5983276 ~ 5983771 (+) True G108756
XM_036936009.1 mRNA upstream 57514 5841517 ~ 5854174 (+) False LOC110505528
XM_036935966.1 mRNA upstream 72042 5812247 ~ 5839646 (+) True mylipb
XM_036935962.1 mRNA upstream 157841 5616004 ~ 5753847 (+) False jarid2a
XM_036935963.1 mRNA upstream 157841 5616004 ~ 5753847 (+) True jarid2a
XR_005034689.1 mRNA upstream 163592 5615996 ~ 5748096 (+) False jarid2a
XM_036936052.1 mRNA downstream 42045 5953981 ~ 5955445 (+) False LOC110505637
XR_005034712.1 mRNA downstream 64264 5976200 ~ 6002265 (+) False LOC110505679
XR_005034714.1 mRNA downstream 66330 5978266 ~ 5979890 (+) True LOC118937375
XR_005034713.1 mRNA downstream 86994 5998930 ~ 6002265 (+) False LOC110505679
XR_005034711.1 mRNA downstream 89286 6001222 ~ 6002265 (+) False LOC110505679
TU123653 other upstream 10738 5900511 ~ 5900950 (+) True G108733
TU123616 other upstream 129044 5780214 ~ 5782644 (+) True G108702
TU123575 other upstream 186109 5719965 ~ 5725579 (+) False G108682
TU123579 other upstream 186306 5719965 ~ 5725382 (+) True G108682
TU123443 other upstream 329238 5581293 ~ 5582450 (+) True LOC110506279
TU123496 other downstream 41950 5953886 ~ 5958769 (+) False LOC110505637
TU123500 other downstream 41950 5953886 ~ 5958813 (+) False LOC110505637
TU123491 other downstream 42009 5953945 ~ 5958769 (+) False LOC110505637
TU123495 other downstream 42009 5953945 ~ 5958813 (+) False LOC110505637
TU123497 other downstream 42009 5953945 ~ 5958769 (+) True LOC110505637

Expression Profile