RNA id: TU123683


Basic Information

Item Value
RNA id TU123683
length 962
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id G108753
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5943752 ~ 5944991 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGGTGAAGGATTACTCCTCTATACACAGAGCAGGGACCGGTGGATTACTCCTCTATACACAGAGCAGGGACCGGTGGATTACTCCTCTATACACAGAGCAGGGACCGGTGGATTACTCCTCTATACACAGAGCAGGGACCGGTGGATTACTCCTCTATACACAGAGCAGGGACAGGTGGATTATTCCTCTATACACAGAGCAGGGACAGGTGGTTTACTCCTCTATACACAGAGCAGGGACCGGTGGATTACTCCTCTATACACAGAGCAGGGACAGGTGGATTACTCCTCTATACACAGAGCAGGGACCGGTGGATTACTCCTCTATACACAGAGCAGGGACAGGTGGATTACTCCTCTATACACAGAGCAGGGACAGGTGGATTACTCCTCTATACACAGAGCAGGGACCGGTGGATTActcctctatacacagagtagGGACAGGTGGATTACTCCTCTATACACAGAGCAGGGACAGGTGGATTACTCCTCTATACACAGAGCAGGGACAGGTGGATTACTCCTCTATACACAGAGCAGGGACCGGTGGGTTACTCCTCTATACACAGAGCAGGGACAGGTGGATTACTCCTCTATACACAGAGCAGGGACCGGTGGGTTACTCCTCTATACACAGAGCAGGGACCGGTGGATTACTCCTCTATACACAGAGCAGGGACCGGTGGGTTACTCCTCTATACACAGAGCAGGGACAGGTGAAGGTTATAGGTGAAGAGGAGAATAACATTCCCAGAAGTGAATGGGAAAAGGACAAACCCTCAGTCCACACAGATCAGGAAGTGGTTGCTGTGACAAGTGAAAGGCTGTATAAACTTGCCCGAGGTCTCAGAAAGGAAAAATAACTTTCTCAACTGTCAAATCTTCGGGATGTCTTAGCTCTGTGAATATACAAGGACCTGCACACGTGATTCTTACTGAGTCAACATAATACATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123672 lncRNA upstream 2496 5941005 ~ 5941256 (+) True G108752
TU123656 lncRNA upstream 31816 5911688 ~ 5911936 (+) True G108736
TU123651 lncRNA upstream 43734 5899724 ~ 5900018 (+) True G108731
TU123650 lncRNA upstream 44961 5898375 ~ 5898791 (+) True G108730
TU123648 lncRNA upstream 47693 5895808 ~ 5896059 (+) True G108728
TU123524 lncRNA downstream 2520 5947511 ~ 5948341 (+) True G108648
TU123503 lncRNA downstream 10712 5955703 ~ 5962125 (+) True G108627
TU123691 lncRNA downstream 38285 5983276 ~ 5983771 (+) True G108756
TU123693 lncRNA downstream 48542 5993533 ~ 5993799 (+) True G108758
TU123695 lncRNA downstream 50811 5995802 ~ 5996126 (+) True G108760
XM_036936009.1 mRNA upstream 89578 5841517 ~ 5854174 (+) False LOC110505528
XM_036935966.1 mRNA upstream 104106 5812247 ~ 5839646 (+) True mylipb
XM_036935962.1 mRNA upstream 189905 5616004 ~ 5753847 (+) False jarid2a
XM_036935963.1 mRNA upstream 189905 5616004 ~ 5753847 (+) True jarid2a
XR_005034689.1 mRNA upstream 195656 5615996 ~ 5748096 (+) False jarid2a
XM_036936052.1 mRNA downstream 8990 5953981 ~ 5955445 (+) False LOC110505637
XR_005034712.1 mRNA downstream 31209 5976200 ~ 6002265 (+) False LOC110505679
XR_005034714.1 mRNA downstream 33275 5978266 ~ 5979890 (+) True LOC118937375
XR_005034713.1 mRNA downstream 53939 5998930 ~ 6002265 (+) False LOC110505679
XR_005034711.1 mRNA downstream 56231 6001222 ~ 6002265 (+) False LOC110505679
TU123653 other upstream 42802 5900511 ~ 5900950 (+) True G108733
TU123616 other upstream 161108 5780214 ~ 5782644 (+) True G108702
TU123575 other upstream 218173 5719965 ~ 5725579 (+) False G108682
TU123579 other upstream 218370 5719965 ~ 5725382 (+) True G108682
TU123443 other upstream 361302 5581293 ~ 5582450 (+) True LOC110506279
TU123496 other downstream 8895 5953886 ~ 5958769 (+) False LOC110505637
TU123500 other downstream 8895 5953886 ~ 5958813 (+) False LOC110505637
TU123491 other downstream 8954 5953945 ~ 5958769 (+) False LOC110505637
TU123495 other downstream 8954 5953945 ~ 5958813 (+) False LOC110505637
TU123497 other downstream 8954 5953945 ~ 5958769 (+) True LOC110505637

Expression Profile