RNA id: TU123524


Basic Information

Item Value
RNA id TU123524
length 659
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G108648
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5947511 ~ 5948341 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTTACAGTCAGTATGTTATGTTGACCCCTGagtttaggttgtttttacagtcagTGTGTCATGTTGACCCCTGagttcagGTTGTTTTTATAGTCAGTATGTTATGTTGACCCCTGAGTTCAGgttgtttttagtcagTATGTTATGTTGATCCCTGAGTTCAACATATTATTATTACACAGGCAGGATGCACCCCTAGTGGTTTCTTAGAATGAAGTCTATTTTTATTCTAGTTCTATCATTCTAATTCTAGATCACACCTTCTCctaataattttttattttttcacctttatttaacccggtaggcaagttgagaacaagttctcatttacaattgcgacctggtcaatataaagcaaaacagtgtgacacatacaacaacacagagttacacatggaataaacaaacatacagtcgaaaaataagtctatatacgatgtgagcaaatgaggtgagataaataagggaggtaaaggcaaaaaaaggctgtgatggcaaagtaaatacaatatagcaagtaaaacactggaatggttgatttgcagtggaagaatgtgcaaagtagagatataaataatgggctaaaaaggagctaaataaataaataaatacagtaggggaagaggtacagtggggcaaaaaagtatttagtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123683 lncRNA upstream 2520 5943752 ~ 5944991 (+) True G108753
TU123672 lncRNA upstream 6255 5941005 ~ 5941256 (+) True G108752
TU123656 lncRNA upstream 35575 5911688 ~ 5911936 (+) True G108736
TU123651 lncRNA upstream 47493 5899724 ~ 5900018 (+) True G108731
TU123650 lncRNA upstream 48720 5898375 ~ 5898791 (+) True G108730
TU123503 lncRNA downstream 7362 5955703 ~ 5962125 (+) True G108627
TU123691 lncRNA downstream 34935 5983276 ~ 5983771 (+) True G108756
TU123693 lncRNA downstream 45192 5993533 ~ 5993799 (+) True G108758
TU123695 lncRNA downstream 47461 5995802 ~ 5996126 (+) True G108760
TU123729 lncRNA downstream 134795 6083136 ~ 6085913 (+) True G108789
XM_036936009.1 mRNA upstream 93337 5841517 ~ 5854174 (+) False LOC110505528
XM_036935966.1 mRNA upstream 107865 5812247 ~ 5839646 (+) True mylipb
XM_036935962.1 mRNA upstream 193664 5616004 ~ 5753847 (+) False jarid2a
XM_036935963.1 mRNA upstream 193664 5616004 ~ 5753847 (+) True jarid2a
XR_005034689.1 mRNA upstream 199415 5615996 ~ 5748096 (+) False jarid2a
XM_036936052.1 mRNA downstream 5640 5953981 ~ 5955445 (+) False LOC110505637
XR_005034712.1 mRNA downstream 27859 5976200 ~ 6002265 (+) False LOC110505679
XR_005034714.1 mRNA downstream 29925 5978266 ~ 5979890 (+) True LOC118937375
XR_005034713.1 mRNA downstream 50589 5998930 ~ 6002265 (+) False LOC110505679
XR_005034711.1 mRNA downstream 52881 6001222 ~ 6002265 (+) False LOC110505679
TU123653 other upstream 46561 5900511 ~ 5900950 (+) True G108733
TU123616 other upstream 164867 5780214 ~ 5782644 (+) True G108702
TU123575 other upstream 221932 5719965 ~ 5725579 (+) False G108682
TU123579 other upstream 222129 5719965 ~ 5725382 (+) True G108682
TU123443 other upstream 365061 5581293 ~ 5582450 (+) True LOC110506279
TU123496 other downstream 5545 5953886 ~ 5958769 (+) False LOC110505637
TU123500 other downstream 5545 5953886 ~ 5958813 (+) False LOC110505637
TU123491 other downstream 5604 5953945 ~ 5958769 (+) False LOC110505637
TU123495 other downstream 5604 5953945 ~ 5958813 (+) False LOC110505637
TU123497 other downstream 5604 5953945 ~ 5958769 (+) True LOC110505637

Expression Profile