RNA id: TU123503


Basic Information

Item Value
RNA id TU123503
length 2501
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G108627
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5955703 ~ 5962125 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAGGTCATTGGTTCTTTTATTTGGCAGTTCACATGTTCCCTTGTCTTTAGCACAGAAAATAATGAGATGGTACATGTCATGTTGACAGAAGCCCAGAGCTTTATTCAGCGAAGCTTGAGACACATGGAGGGAGAACATTTGTACTGTAGTAGTCAGCTTGTGGAGGATGCAGGCAGATCGTTGTGACATATTTAAACAGAGTCATTGTAGTGTGCCGAATGTGGAGTATCCATTCTCTATGTATGGAACTACCAGAGAGATATGACACCTcacttgaaacacacacacacacacacactcacacacacacacacactcacacacacactcactcacacacacacacacacacacacacacactcacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcacacacacacacacacacacacacacacgtagacttAGAGTGAACATGTCTGTCAAGATAAAGGGAAGGGGGCTATAGAACATTCTACTGGCCAGGATGTCATGTATGGTGGCTCTATGATGTCATGTATGGTGGCTCTATGATGTCATCATAACATTCAAGTCTCCAGATTCAGTGGACATATCAGACTAGAGTAAGCTAAAGTTAATCACctggcctgcatcccaaatggaacactatacCCTTTTTTTCTGCACTActctggtcaacagcagtgcactttatagggaacagGCTGACATATATAGTCAGGGGTCAGTCTGGAGGAAGTGATAAACAGCTGCTCCCTCTGGAGACACATTGTTAAAGAGGACCAATCACCTCTCTTGTTCAAGCTACCTCAAGATCATTTGAGGACATGTGGACATTTTAAGCCGAGAGTTTGGCAGATTTTTAATGTGAGTTCACAGcatgtgtgtaattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtgcgtgcgtgtgtgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtccgtgagtgtatgtgtgtgtgtgcgtgcgtgcgtccgtgagtgtgtgtgtgaggtgataAAATGGGATGCGCTGTCAGGAGTCTGAGTTCACTACCTGTTAACATTCTTCACAAAGACACAGAAACTGACATCATCAGAAAACAATGCAAACGTCAGCTAACAACCAACTCACAACACCAGAAAAGACTTTCACAAAGAAATGATTGTAGATTCAAATTTCAAGAACCAATAAATAATTAGATAACAAAAGAAACATTTGAAATTGTACAACACAGTGCATTTGATACACTTGTTTGTGCTCAATCAGCCTAGCCTACCCATTAAGATAGATACAAAAATGAAGTATTTACAAAATAATACCCATGTTTTCATGTTGTTGATTTTTTTCCCCTTCGGAAAAAATAAATCATTAATTATCTAATGGAAAATACTGTTAAtactggtggtgtgtgtgtgtgtgtgtgagtgtgtgtggtgtgtgtgtggtgtgtgtgtgtggtgtgtgtgtggtgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgtgtgtggtgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgtgtggtgtggtgtgtgtgtggtgtgtgtggtgtgtgtggtgtggtgtgtgtgtgtgtgtgtgtggtgtggtgtgtgtgtggtgtgtgtgtgtggtgtgtgtgtggtgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatggatgggtCAGGGTGGGTGGTGTAGTGTGTTGGTAGTGAAGTCCTCCACCTTCCAGGACTCCAGGGCTTGCTGTCTGCTGTGGAGTTTCCAGGGGTGAGGCTGGGTTGGGGGACGTGATTGGTGGACGTTGGGGAGAGGTGGGGCTCACGCTGTCAGCTCCTCCCTCAGCTCTTTGTTCCTGCGCACCACGGCTGCGTGTCTCTCCTGAAACACAGGTCACAGACACCACAGATAGAGAGGAGGAAGTTAACATCCACACTGGACAGGAAGTTAGAGCTGTAGCTTACACAGGCAGGATGCACCCCTAGTGGTCTCTTAGAATGAAGTCTCTATTTTCATTCTAGTTCTATCATTCTAATTCTAGAACACACCTTCTCCTGCAGGCGTTCCATCATGGCTGCCAGGTGGGCCTCCCGGTTCTCCTTGATTTGCTCCATCTTCATGGTGAGCTTCTCCTCTGCCATTTTGCTGAAGTTGTTGTTCTCTTCCATGGCCTTGAGCAGCACATCCCTCTCATGCTCCCTCttctctgccagggccctcagcACCTGGGCCTCCTGGGACTGGACCACAGAGAGACCATGGATGTCACCATAGAGTTGGAATTACTTGTCTGAAGCACCTCAGACAATagtaattttttttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123524 lncRNA upstream 7362 5947511 ~ 5948341 (+) True G108648
TU123683 lncRNA upstream 10712 5943752 ~ 5944991 (+) True G108753
TU123672 lncRNA upstream 14447 5941005 ~ 5941256 (+) True G108752
TU123656 lncRNA upstream 43767 5911688 ~ 5911936 (+) True G108736
TU123651 lncRNA upstream 55685 5899724 ~ 5900018 (+) True G108731
TU123691 lncRNA downstream 21151 5983276 ~ 5983771 (+) True G108756
TU123693 lncRNA downstream 31408 5993533 ~ 5993799 (+) True G108758
TU123695 lncRNA downstream 33677 5995802 ~ 5996126 (+) True G108760
TU123729 lncRNA downstream 121011 6083136 ~ 6085913 (+) True G108789
TU123710 lncRNA downstream 125051 6087176 ~ 6087617 (+) True G108773
XM_036936052.1 mRNA upstream 258 5953981 ~ 5955445 (+) False LOC110505637
XM_036936009.1 mRNA upstream 101529 5841517 ~ 5854174 (+) False LOC110505528
XM_036935966.1 mRNA upstream 116057 5812247 ~ 5839646 (+) True mylipb
XM_036935962.1 mRNA upstream 201856 5616004 ~ 5753847 (+) False jarid2a
XM_036935963.1 mRNA upstream 201856 5616004 ~ 5753847 (+) True jarid2a
XR_005034712.1 mRNA downstream 14075 5976200 ~ 6002265 (+) False LOC110505679
XR_005034714.1 mRNA downstream 16141 5978266 ~ 5979890 (+) True LOC118937375
XR_005034713.1 mRNA downstream 36805 5998930 ~ 6002265 (+) False LOC110505679
XR_005034711.1 mRNA downstream 39097 6001222 ~ 6002265 (+) False LOC110505679
XM_036936117.1 mRNA downstream 40867 6002992 ~ 6049501 (+) False setd2
TU123653 other upstream 54753 5900511 ~ 5900950 (+) True G108733
TU123616 other upstream 173059 5780214 ~ 5782644 (+) True G108702
TU123575 other upstream 230124 5719965 ~ 5725579 (+) False G108682
TU123579 other upstream 230321 5719965 ~ 5725382 (+) True G108682
TU123443 other upstream 373253 5581293 ~ 5582450 (+) True LOC110506279
TU123521 other downstream 37060 5999185 ~ 6002194 (+) True LOC110505679
TU123712 other downstream 94871 6056996 ~ 6058335 (+) True G108775
TU123748 other downstream 234807 6196932 ~ 6199341 (+) True G108805
TU123869 other downstream 319946 6282071 ~ 6285940 (+) False G108874
TU123867 other downstream 321579 6283704 ~ 6285940 (+) True G108874

Expression Profile