RNA id: TU123691


Basic Information

Item Value
RNA id TU123691
length 496
lncRNA type read_through
GC content 0.41
exon number 1
gene id G108756
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5983276 ~ 5983771 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCACTATGAAAACCCTAGCAGGCTACCATTATTGTGTCTAGGTCATATTTACCTGACCCTGTATGTTCGGCGACACAGGCGTGCCTTTCCCTTCCGAGAGATGCCACACTGATGAGGTGCCGTTTCTGCTGTGGTCACAAAGGTTCAACACCAGACGCGCAGCAAAGTAACGTTTCGAACGAAATACACACGAGCCGAGACGAACGGGTTACGGACGCAATCTTTCCCTATTGAAATCCGTGCAGAACAAATTGTTAGAATATCATACTGATATCAAACGGCGTTTTCCTGCTTTATCATCCAAGTATCGGTATGTTCACGGTTACAATACTCGTTTGATAAAATAACTTTAAAAGTTCTGCTGCACATTTTCAAAGGCAAATCTGTCTGTTCAGTtatctggccttattgcttaaatatacattTGTGTTACAGAAACATGATAATTGAcaataattatttaaataaatgtaattggCGTGTCAGTATGTAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123503 lncRNA upstream 21151 5955703 ~ 5962125 (+) True G108627
TU123524 lncRNA upstream 34935 5947511 ~ 5948341 (+) True G108648
TU123683 lncRNA upstream 38285 5943752 ~ 5944991 (+) True G108753
TU123672 lncRNA upstream 42020 5941005 ~ 5941256 (+) True G108752
TU123656 lncRNA upstream 71340 5911688 ~ 5911936 (+) True G108736
TU123693 lncRNA downstream 9762 5993533 ~ 5993799 (+) True G108758
TU123695 lncRNA downstream 12031 5995802 ~ 5996126 (+) True G108760
TU123729 lncRNA downstream 99365 6083136 ~ 6085913 (+) True G108789
TU123710 lncRNA downstream 103405 6087176 ~ 6087617 (+) True G108773
TU123731 lncRNA downstream 108450 6092221 ~ 6092461 (+) True LOC118937376
XR_005034714.1 mRNA upstream 3386 5978266 ~ 5979890 (+) True LOC118937375
XM_036936052.1 mRNA upstream 27831 5953981 ~ 5955445 (+) False LOC110505637
XM_036936009.1 mRNA upstream 129102 5841517 ~ 5854174 (+) False LOC110505528
XM_036935966.1 mRNA upstream 143630 5812247 ~ 5839646 (+) True mylipb
XM_036935962.1 mRNA upstream 229429 5616004 ~ 5753847 (+) False jarid2a
XR_005034713.1 mRNA downstream 15159 5998930 ~ 6002265 (+) False LOC110505679
XR_005034711.1 mRNA downstream 17451 6001222 ~ 6002265 (+) False LOC110505679
XM_036936117.1 mRNA downstream 19221 6002992 ~ 6049501 (+) False setd2
XM_036936127.1 mRNA downstream 19221 6002992 ~ 6049501 (+) True setd2
XM_036936174.1 mRNA downstream 108308 6092079 ~ 6093940 (+) False LOC118937376
TU123500 other upstream 24463 5953886 ~ 5958813 (+) False LOC110505637
TU123495 other upstream 24463 5953945 ~ 5958813 (+) False LOC110505637
TU123496 other upstream 24507 5953886 ~ 5958769 (+) False LOC110505637
TU123491 other upstream 24507 5953945 ~ 5958769 (+) False LOC110505637
TU123497 other upstream 24507 5953945 ~ 5958769 (+) True LOC110505637
TU123521 other downstream 15414 5999185 ~ 6002194 (+) True LOC110505679
TU123712 other downstream 73225 6056996 ~ 6058335 (+) True G108775
TU123748 other downstream 213161 6196932 ~ 6199341 (+) True G108805
TU123869 other downstream 298300 6282071 ~ 6285940 (+) False G108874
TU123867 other downstream 299933 6283704 ~ 6285940 (+) True G108874

Expression Profile