RNA id: TU123693


Basic Information

Item Value
RNA id TU123693
length 267
lncRNA type intronic
GC content 0.31
exon number 1
gene id G108758
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5993533 ~ 5993799 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttgatttgttttatcacttttttggttacatgattccatatgtgttacttcatagttttgacgtcttcactattattctacaatgtagaaaatagtaaaaaataaagaaaaacccttgaatgagtaggtgcgtcTAAACGTTTACCCTATCTGCTCCTGCACCATGCCAATGGCCTGGGAGGATGGGACACCACtactcaacacaccctgtaactcttctgaagttAAATCTCATGTACCCAAATACCCCTCTGcaagctgccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123691 lncRNA upstream 9762 5983276 ~ 5983771 (+) True G108756
TU123503 lncRNA upstream 31408 5955703 ~ 5962125 (+) True G108627
TU123524 lncRNA upstream 45192 5947511 ~ 5948341 (+) True G108648
TU123683 lncRNA upstream 48542 5943752 ~ 5944991 (+) True G108753
TU123672 lncRNA upstream 52277 5941005 ~ 5941256 (+) True G108752
TU123695 lncRNA downstream 2003 5995802 ~ 5996126 (+) True G108760
TU123729 lncRNA downstream 89337 6083136 ~ 6085913 (+) True G108789
TU123710 lncRNA downstream 93377 6087176 ~ 6087617 (+) True G108773
TU123731 lncRNA downstream 98422 6092221 ~ 6092461 (+) True LOC118937376
TU123717 lncRNA downstream 124038 6117837 ~ 6119044 (+) True G108779
XR_005034714.1 mRNA upstream 13643 5978266 ~ 5979890 (+) True LOC118937375
XM_036936052.1 mRNA upstream 38088 5953981 ~ 5955445 (+) False LOC110505637
XM_036936009.1 mRNA upstream 139359 5841517 ~ 5854174 (+) False LOC110505528
XM_036935966.1 mRNA upstream 153887 5812247 ~ 5839646 (+) True mylipb
XM_036935963.1 mRNA upstream 239686 5616004 ~ 5753847 (+) True jarid2a
XR_005034713.1 mRNA downstream 5131 5998930 ~ 6002265 (+) False LOC110505679
XR_005034711.1 mRNA downstream 7423 6001222 ~ 6002265 (+) False LOC110505679
XM_036936117.1 mRNA downstream 9193 6002992 ~ 6049501 (+) False setd2
XM_036936127.1 mRNA downstream 9193 6002992 ~ 6049501 (+) True setd2
XM_036936174.1 mRNA downstream 98280 6092079 ~ 6093940 (+) False LOC118937376
TU123500 other upstream 34720 5953886 ~ 5958813 (+) False LOC110505637
TU123495 other upstream 34720 5953945 ~ 5958813 (+) False LOC110505637
TU123496 other upstream 34764 5953886 ~ 5958769 (+) False LOC110505637
TU123491 other upstream 34764 5953945 ~ 5958769 (+) False LOC110505637
TU123497 other upstream 34764 5953945 ~ 5958769 (+) True LOC110505637
TU123521 other downstream 5386 5999185 ~ 6002194 (+) True LOC110505679
TU123712 other downstream 63197 6056996 ~ 6058335 (+) True G108775
TU123748 other downstream 203133 6196932 ~ 6199341 (+) True G108805
TU123869 other downstream 288272 6282071 ~ 6285940 (+) False G108874
TU123867 other downstream 289905 6283704 ~ 6285940 (+) True G108874

Expression Profile