RNA id: TU123695


Basic Information

Item Value
RNA id TU123695
length 325
lncRNA type read_through
GC content 0.40
exon number 1
gene id G108760
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5995802 ~ 5996126 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctatatacaggaagtagaaaataacatggctatctatatacaggaagtagaaaataacatggctatctatctacagggagtagaaaataacatggctaaatacaaggggtaccagtactgcaATTGCagttgcaaaaatcgctgaagtaggagacttatttccctcaccaactttaaacatcaactatctgagcagccaaccgattgctgcagctgtacatagttcatctgtaaatagcccacccaatctacctacctcatcccgatactgtttttattttatttacttttctgctcttttgcacaccagtatctctacttgcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123693 lncRNA upstream 2003 5993533 ~ 5993799 (+) True G108758
TU123691 lncRNA upstream 12031 5983276 ~ 5983771 (+) True G108756
TU123503 lncRNA upstream 33677 5955703 ~ 5962125 (+) True G108627
TU123524 lncRNA upstream 47461 5947511 ~ 5948341 (+) True G108648
TU123683 lncRNA upstream 50811 5943752 ~ 5944991 (+) True G108753
TU123729 lncRNA downstream 87010 6083136 ~ 6085913 (+) True G108789
TU123710 lncRNA downstream 91050 6087176 ~ 6087617 (+) True G108773
TU123731 lncRNA downstream 96095 6092221 ~ 6092461 (+) True LOC118937376
TU123717 lncRNA downstream 121711 6117837 ~ 6119044 (+) True G108779
TU123740 lncRNA downstream 137250 6133376 ~ 6134440 (+) True G108799
XR_005034714.1 mRNA upstream 15912 5978266 ~ 5979890 (+) True LOC118937375
XM_036936052.1 mRNA upstream 40357 5953981 ~ 5955445 (+) False LOC110505637
XM_036936009.1 mRNA upstream 141628 5841517 ~ 5854174 (+) False LOC110505528
XM_036935966.1 mRNA upstream 156156 5812247 ~ 5839646 (+) True mylipb
XM_036935963.1 mRNA upstream 241955 5616004 ~ 5753847 (+) True jarid2a
XR_005034713.1 mRNA downstream 2804 5998930 ~ 6002265 (+) False LOC110505679
XR_005034711.1 mRNA downstream 5096 6001222 ~ 6002265 (+) False LOC110505679
XM_036936117.1 mRNA downstream 6866 6002992 ~ 6049501 (+) False setd2
XM_036936127.1 mRNA downstream 6866 6002992 ~ 6049501 (+) True setd2
XM_036936174.1 mRNA downstream 95953 6092079 ~ 6093940 (+) False LOC118937376
TU123500 other upstream 36989 5953886 ~ 5958813 (+) False LOC110505637
TU123495 other upstream 36989 5953945 ~ 5958813 (+) False LOC110505637
TU123496 other upstream 37033 5953886 ~ 5958769 (+) False LOC110505637
TU123491 other upstream 37033 5953945 ~ 5958769 (+) False LOC110505637
TU123497 other upstream 37033 5953945 ~ 5958769 (+) True LOC110505637
TU123521 other downstream 3059 5999185 ~ 6002194 (+) True LOC110505679
TU123712 other downstream 60870 6056996 ~ 6058335 (+) True G108775
TU123748 other downstream 200806 6196932 ~ 6199341 (+) True G108805
TU123869 other downstream 285945 6282071 ~ 6285940 (+) False G108874
TU123867 other downstream 287578 6283704 ~ 6285940 (+) True G108874

Expression Profile