RNA id: TU123751


Basic Information

Item Value
RNA id TU123751
length 1289
lncRNA type antisense_over
GC content 0.52
exon number 7
gene id G108805
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 6151712 ~ 6199341 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggAGAAAAGAGGACGGTGAGAGTAAGTGATGGGAGTAGAAATAGAGGAGAGTTAGGAGGTTGAGAAGAGGGGACGTAGAGGTGGGAGGTTGAGAAGAGGGGACGTAGAGGTGGGAGGTTGAGAAGAGGGGACGTAGAGGTGGGAGGTTGAGAAGAGGGGACGTAGAGGTGGGAGGTTGAGAAGAGGGGACGTAGAGGTGGGAGGTTGAGAAGAGGGGAGATGGCAGGGGATAGAAagcaaagagggagggagggaaagagagggaggagacatgtGAATGGAATTATAGGGTTGAAGAAAGGACATGGTTAGATCCAAAACCACTCTGAATAAAGACAAGGAATAAGCATGTCTCCGTTAGTGTGTCTACCTGCTGCTCTTCTCCTATAGCCAGTGTGTAGGCCAAGATGCTGTGGAGCTCTTCAGCATTAGGACACTTGAGGAGGAAGTCTctcagcagagagaacagagagatctGAACAGTCTGCTTTTCATCAGACAGAGGACTGCCATCTTTCTCCACACTGTAGTGTGTCCGTATGGTATCCAGGATGTACTGCACTCCATACTTCTTCCTCATGCGCTGCTTCCCATCCTTGATCACAGACGACAGGTACTGGACATGGCCCAGACACACAGCGAAGTGGCTGCTGCTCCAGATGCGGAAGTCAAATAGCAGGTGTTGGTAGAGCTGCAGGAGCAACGGACTGTTCTCCTCACTGGATACCTGCTCCAACAGGAACTGACACGCCATCAGAACAGACATATCCATCATACTACCTGGGACCTTAGTGAGCATGGCTCCTATAATGCTGGGTCCGTGGCAGTTCAGTAGGCTCTCCTGGTTGACAGGGTGATGACGAATCAGATTCTTCACCATCAGCAGGAAGGCTGCTACACTGTTCCTCTCCAGCCGaccatCGGAGGACTTGCCCAGTGGCAGCAGCATGTCGACAGGCCCCCGGGAGGAGCTACAGGTTAGTTCTGGTCCAAGCAGGTCTGACGTCTCCTGACCTCCTCCCTCCGCCTGCTCTGGCTCACACACCTGTTCCAGGAGGGGCAGTAGAACCCCCATGCCCCCCACTGTGTTCAACACATCCTACAGGGATACGCACACAGaaacatacatacatgcacacagtcagacacagagacatacacacacagacacagagacatacacacagacacagagacatacacagtcagacacagagacatacacagtcagacacagagacatacacagtcagacacagagacatacacacagacacagagacatacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123743 lncRNA upstream 13880 6136775 ~ 6137832 (+) True G108802
TU123740 lncRNA upstream 17272 6133376 ~ 6134440 (+) True G108799
TU123717 lncRNA upstream 32668 6117837 ~ 6119044 (+) True G108779
TU123731 lncRNA upstream 59251 6092221 ~ 6092461 (+) True LOC118937376
TU123710 lncRNA upstream 64095 6087176 ~ 6087617 (+) True G108773
TU123776 lncRNA downstream 17101 6177254 ~ 6178243 (+) True G108818
TU123756 lncRNA downstream 35478 6195631 ~ 6199341 (+) False G108805
TU123788 lncRNA downstream 42162 6202315 ~ 6203532 (+) True G108828
TU123789 lncRNA downstream 43620 6203773 ~ 6204116 (+) True G108829
TU123796 lncRNA downstream 55099 6215252 ~ 6216642 (+) True G108836
XM_036936180.1 mRNA upstream 57772 6092145 ~ 6093940 (+) False LOC118937376
NM_001165046.1 mRNA downstream 71216 6231369 ~ 6250042 (+) True ccdc12
XM_036936209.1 mRNA downstream 126405 6286558 ~ 6312599 (+) False cep72
XM_036936220.1 mRNA downstream 126405 6286558 ~ 6312599 (+) False cep72
XM_036936215.1 mRNA downstream 126458 6286611 ~ 6312599 (+) True cep72
XM_036936282.1 mRNA downstream 218220 6378373 ~ 6389788 (+) False trip13
TU123712 other upstream 93377 6056996 ~ 6058335 (+) True G108775
TU123521 other upstream 149518 5999185 ~ 6002194 (+) True LOC110505679
TU123495 other upstream 192899 5953945 ~ 5958813 (+) False LOC110505637
TU123491 other upstream 192943 5953945 ~ 5958769 (+) False LOC110505637
TU123748 other downstream 36779 6196932 ~ 6199341 (+) True G108805
TU123869 other downstream 121918 6282071 ~ 6285940 (+) False G108874
TU123867 other downstream 123551 6283704 ~ 6285940 (+) True G108874
TU124055 other downstream 472925 6633078 ~ 6633913 (+) False G109020
TU124056 other downstream 472925 6633078 ~ 6633913 (+) False G109020

Expression Profile