RNA id: TU124081


Basic Information

Item Value
RNA id TU124081
length 433
lncRNA type intronic
GC content 0.37
exon number 4
gene id G109030
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 6663269 ~ 6664730 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtactgtatatatggtactgtatagatggtactgtactggtactgtatagctggtactgtatagatggtactgtatagatggtactgtatagatggtactgtactggtactgtatagatggtactgtactggtactgtatagatggtactgtatagatggtactgtatagatggtactgtatagatggtactgtatagatggtactgtactggtactgtatagatggtactgtatagatggtactgtatagatggtactgtatagatggtactgtactggtactgtatagatggtacggtatagatggtactgtactgtatagatggtactgtatagatggtactggtactgtatagatggtactggtactgtatagatggtactgtatagatgatggtactgtatagatggtacTGATACTGTATAGATgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124074 lncRNA upstream 14202 6647043 ~ 6649067 (+) True LOC110505995
TU124053 lncRNA upstream 37256 6624956 ~ 6626013 (+) True G109019
TU124052 lncRNA upstream 39058 6623670 ~ 6624211 (+) True G109018
TU124048 lncRNA upstream 63103 6598923 ~ 6600166 (+) True G109015
TU124043 lncRNA upstream 74641 6588164 ~ 6588628 (+) True G109011
TU124083 lncRNA downstream 5968 6670698 ~ 6672100 (+) True G109032
TU123939 lncRNA downstream 44394 6709124 ~ 6753929 (+) True G108930
TU123943 lncRNA downstream 127281 6792011 ~ 6793179 (+) True G108934
TU124141 lncRNA downstream 148064 6812794 ~ 6813416 (+) True G109072
TU124151 lncRNA downstream 179146 6843876 ~ 6844930 (+) True G109080
XM_036936327.1 mRNA upstream 13475 6645216 ~ 6649794 (+) False LOC110505995
XM_036936317.1 mRNA upstream 13475 6645480 ~ 6649794 (+) False LOC110505995
XM_036936302.1 mRNA upstream 33800 6545368 ~ 6629469 (+) False zgc:158766
XM_036936299.1 mRNA upstream 33801 6545369 ~ 6629468 (+) True zgc:158766
XM_036936305.1 mRNA upstream 33802 6545369 ~ 6629467 (+) False zgc:158766
XM_021585459.2 mRNA downstream 21170 6685900 ~ 6688012 (+) True LOC110505984
XM_036936334.1 mRNA downstream 24161 6688891 ~ 6839464 (+) False kif13a
XM_036936331.1 mRNA downstream 24162 6688892 ~ 6839464 (+) False kif13a
XM_036936344.1 mRNA downstream 24162 6688892 ~ 6839464 (+) False kif13a
XM_036936339.1 mRNA downstream 24163 6688893 ~ 6839464 (+) False kif13a
TU124057 other upstream 29356 6633078 ~ 6633913 (+) False G109020
TU124135 other downstream 191356 6856086 ~ 6868976 (+) True rbm24b
TU125016 other downstream 243817 6908547 ~ 6911205 (+) True malsu1
TU125022 other downstream 276786 6941516 ~ 6943083 (+) True LOC110535156
TU125129 other downstream 470517 7135247 ~ 7140979 (+) False G109821
TU125130 other downstream 470517 7135247 ~ 7140979 (+) False G109821

Expression Profile