RNA id: TU150216


Basic Information

Item Value
RNA id TU150216
length 3817
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G130335
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29726551 ~ 29744867 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGCACGTTGAATGACTGTTAATGAAACCAACACACAAGTTAGCATCTGCGTAATATACTCAGCATATATTGGAAAATGAAAGTTTTAGACACCGTTCGCATTACTGGCAAGTATTTCTTTACATACTGTAGTTTAACTCCATGTTTATGGACAGAGGATACCTTGAAATAATCATTTGTACCAATCCACGATCAGTCATTATTACAGTTTGTTTTCATTACGTTTCATATTTTATTCCAAATTAGTTAACAAGGATATATCAACAAAGGAAATAGCTACACTGAAGGTCAAAGTTGGGGAGACGAGGTGAAGTAAGCCCCATTTATACCTTGTTCTAACTtgcgtcctttgtcctgatcttgtccacattctgattgtgcccacatttttagacaggtgtTAACAATCaaaagacacattgtgatctgattgtgatcttATTGTGTCTGGACATCTTACAAGTGTAGACAGATCTGGACAGAgaaaccatttaaatcatcattattCCGGCCTCTAAAATCAGTGACAGGTGGCTGATtacatcaatatgtgtcttacagtaaatatatatataaacattataGCTGTGACATTTTTTGCATAAAGGAAGGGACCAGGAACTCTGGTCACAATGCAGACACAGTGGACAGATAACAGACTCATTTTAATACCATGTGTAGACACACTTCtggaaatgtgggcacaatcagaatgtagaCTAGATCAGGACAAAAGTCCCacgttagcaccaggtataaatgGGGATATAGACAGTCAAAATGGTGGGGGTTCTAATTGCAGGAGTTTGCTGCCAAAAGAAAAACAAGGCAGCTCATGTGTATTGCAACACAACTTTCTGCCTTCCCCTTGCCTTGTCGACACAGAGCTGCAGTCTTACTTAAGTATTTTCACCTTGGTTTCACTGTGATTACTGTCCTCCCAGAGTTTCCCACAGTCAATGTTACAGACTGCACTGCAGTAAATGTTACACAGTGTGATGTAAAGCCATTGCTGCTTACAGCTCCCCATGTCTCCACTGAGTAGGCCTACagcacaggtgtcaaactcattccacggagggctgagtgtctgcgggttttcgcttcTCCCTTGTACTTCATTGAATTATGACTATGAATTAtagtcactaattagtaaggaactcctcaCAACTTGTTGTCTAGGgaaaaacaaaaacctgcagacaccaggtcctccatggaatgagtttgacaccccttgCCTACAGGGTACAATGATGACAGAGCATAACAGTCATACAGCCAAATCCTCACAGGGTGTGATAGGTGTTATGATGGGTTCACTAATCTGTCAAATACTGTGACATCTCTCATTATGAGGAATGAAGCATTAAAAGGAATTTGAGATATTAGTGATCCAAATAAAATGACAAAGAAAGAAGGTGCAAAGAAAGAGTTagaaagaggagACAGGGGAGAACGAAGGAGATTGAGGAAATAAGGGACTGtaaagagagagttagaaagaggAAACAGGGGAGAACGAAGGAGATTGAGGAAATAAGGGACTGTAAAGAAAGAGTTagaaagaggagacaggggagaacgAAGGAGATTGAGGAAATAAGGGACTGTAAAGAAAGAGTTagaaagaggagacaggggagaacgAAGGAGATTGGGGAAATAAGGGACTGTaaagagagagctagaaagaAAGAAGCGAAGGAGggtgaaagagagtgaaagagtgagagaaaaagaggaggaagagaggatggagctTAGTTAGTGACAGTGGAGGAGTGGGGTTTTGCCCACCTGTGTCTCTTCCTTCTGGTCAAAGCCAGAAGGACGAGGGGTAGCCAGAAGCTAGCAGTAGCCACCCCACTGCCATGTCCTGCTCTGAACCCCATCACCACTTACATTGTTCCAAACAGTGCACCTGGGCTCTGcagtctccacacacacacacacacagagtatcaCCAACAACATACAGGAGCTTCAACCTGTGAGTCTATTCACTATAGAAAATTGTTGCCTTCAAGATATAAAGTACCCTTCTTTTATACAATATATTCTCGAAATTAGCCAAACGAAAGAGAACAAAAATACACgaagggctcgattcaatccgtatcgctcAAGATCATCGCTATTCAAATGTGAAGGCAATATTCCAAGTTCGAGAAGACTgaattcacggtaaacgctgcatatgtcagctcaatAGACAATTACGTTACCATTTCAAGCGTTCTAGAGTGCAGAACTGGTGATTCGGATTGAATCGAGCCGTAAAAGATGAGCATGTCGGCATTGGCCAAAATAGTGGAACATACTGTATAAACCTTTTGGAAACCATACAGCAAAACATGACTCTTTACAACTCTTCGTGTCAAAACCATTTTTCACAATAatatcagtgactttcaaagaaCATCTTCTGGCACTACAAGCTGCTAACTAGCATGTGTTATTACCTGGTTATTACAGTACTAAGACTAACCTGCTGCAGTGATATTTCAGTAATTCGCTTATACTGTGGTGAATGCTTTTTCAATGCCACAGTATGAGAAGTTGTCATATTTCTTGTGATGACATGTATCCATGTAATAATGTTGTGGTTGTTTATTACATTCATATTTTCAGTCCGAATTAGTTCTAAAAATGGactcaaaataaatatttttgcaGTGAAATCACATTTGTCTTTACAACATTAATTGGTTTGAAACCTTGATGGTTTTAATTTTAGATACAGAGCTCGTCATCAAATATGGTAATGCCCCTAAACGGCAATAGTTAGGCCCCAAAACATTCAAGAATTTTTTCAACAAATATGTATTGGGAAGAAAATTCTAGCTGTCCTATTTGGTCCTACCTGTAGAGAAACTGCAACAGAGAGTCGGTTGCATGAGGTTTTCTCAttttaagagagagagaattaaaatCTCACTATCAATACAAGCAATACTTCTGTTTCCTtggtacatttgatttgatgatattTCTGTTTAATTCAGACATGCAATGAATTGAAGTACAATATTGGCAAGGGGAGGATTTTGAAGTCtgacaaaaatgttttttttgcatttgCATGTATCCTCCCGTCGCCTAAACTTCATACAACATGGTCAGACAATAATTCATAACAGCCTTGAATGTGTGATCATGGTCATATTCTGGTTAACAAACAACTTTTTCATTTTCATTACTCTTAACCTAATGCTGAGACTGAGTGTCTCTATAATTCTGTAGTGGTGTGGGTTATATATGTGTATGTTTATCTGTATGCATGTTTGTTACTTTGATTCGATCCTGTAGTTGAACCTTAACCACTGTAAAGTCCACTGTACAAGTCCCACCAGGAATGTTGTTCATTTTTTGTTGGTATTATTCACAAGATAAAGTATGGCATGAGGAAAAGCCACTCTCTCAGCAAGAAGTctatctcttcccctcctccacctccccctataCACACAAGTAGAACTATAATGCATTAGGCGGTGGGAGGAGCTAATATTCACTGAGGTTGTGCCACTTTGAGATCTGCCGACGGGGGTTTTCACAGACCTCCCGCCAGTGGGTGGCGCCAGAGGGACAGGGGCTGTGCAGGCCGAGGGGCAGACACCCCACCACCTCGTTCTTAGTGGTACGGTCAAAGTCGACCACCACAAACTCCACAGAGATCTCTGGGAGCAGCTCGGGGGGCACGTCGTAGATGAAGGACTCGTTGAAGACGGGGTTGAGCGTGCACCTCTTCACGTGCGTCTTTTTCTTGGCGATGCGCTTGCGTCCGTAGAACACATTGACTTTCACATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150228 lncRNA upstream 54606 29664010 ~ 29671945 (+) True G130345
TU150172 lncRNA upstream 145141 29577661 ~ 29581410 (+) True G130297
TU150155 lncRNA upstream 171646 29554407 ~ 29554905 (+) False G130282
TU150156 lncRNA upstream 171696 29554490 ~ 29554855 (+) True G130282
TU150166 lncRNA upstream 179509 29546659 ~ 29547042 (+) True G130291
TU150294 lncRNA downstream 52617 29785126 ~ 29785365 (+) True G130410
TU150295 lncRNA downstream 53195 29785704 ~ 29785943 (+) True G130411
TU150308 lncRNA downstream 67026 29799535 ~ 29799827 (+) True G130424
TU150319 lncRNA downstream 72665 29805174 ~ 29806131 (+) True G130427
TU150303 lncRNA downstream 107950 29840459 ~ 29840782 (+) True G130419
XM_021557752.2 mRNA upstream 28865 29685855 ~ 29697686 (+) False LOC110486279
XM_021557744.2 mRNA upstream 28865 29685868 ~ 29697686 (+) False LOC110486279
XM_021557732.2 mRNA upstream 41401 29679207 ~ 29685150 (+) True LOC110486269
LOC118936731 mRNA upstream 64523 29654875 ~ 29662028 (+) True LOC118936731
XR_005039452.1 mRNA upstream 132335 29594164 ~ 29594216 (+) True LOC118944146
XM_021557850.2 mRNA downstream 33173 29765682 ~ 29768627 (+) True LOC110486333
XM_021557906.2 mRNA downstream 83271 29815780 ~ 29833805 (+) True LOC110486369
XR_005036167.1 mRNA downstream 168348 29900857 ~ 29914741 (+) False LOC110486403
XR_005036165.1 mRNA downstream 168350 29900859 ~ 29914741 (+) False LOC110486403
XR_002468068.2 mRNA downstream 168351 29900860 ~ 29914741 (+) False LOC110486403
TU150246 other upstream 32700 29685967 ~ 29693851 (+) True LOC110486279
TU150186 other upstream 85455 29600026 ~ 29641096 (+) True G130308
TU148912 other upstream 241421 29484633 ~ 29485130 (+) True G129155
TU148818 other upstream 248421 29477617 ~ 29478130 (+) True LOC110534631
TU148590 other upstream 745263 28939899 ~ 28981288 (+) True G128853
TU150298 other downstream 57067 29789576 ~ 29789831 (+) True G130414
TU151478 other downstream 967673 30700182 ~ 30700623 (+) True G131491
TU151514 other downstream 1015546 30748055 ~ 30749954 (+) True G131517
TU151868 other downstream 1558961 31291470 ~ 31293034 (+) False LOC110534710
TU151908 other downstream 1627927 31360436 ~ 31363213 (+) False eaf1

Expression Profile