RNA id: TU157788


Basic Information

Item Value
RNA id TU157788
length 369
lncRNA type intronic
GC content 0.44
exon number 1
gene id G137059
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36102314 ~ 36102682 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCAGACATGGGAGCAGATGGTAAAGGGGCAGACAAAATGCCAATAAGCGCTAAGCCTGGACTGAGAAAATAAAGATAGAAGTGCCATCTGTAACTAGAAACAATAGTAATTACAAACACTAACAGGTCTGGGCAAACAAGTGGCTACAATCACATTACACTTACATGCCtgattttacaccactgctagtCACTTTCTTCTGTAAtattccctcccatcctcctttatctccctcactccatcacttcctcccaccctccctcatTACATCACTCACTACATCCCTCATTATATCActcctttcttccctccctccttcctttcctccctcattacatccctccttcctttcctccctcattacatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157686 lncRNA upstream 307 36101634 ~ 36102007 (+) True G136958
TU157784 lncRNA upstream 9759 36092228 ~ 36092555 (+) True G137055
TU157783 lncRNA upstream 10589 36091393 ~ 36091725 (+) True G137054
TU157782 lncRNA upstream 12026 36090056 ~ 36090288 (+) True G137053
TU157563 lncRNA upstream 177357 35924755 ~ 35924957 (+) True G136842
TU157796 lncRNA downstream 11505 36114187 ~ 36114418 (+) True G137067
TU157799 lncRNA downstream 13979 36116661 ~ 36116868 (+) True G137070
TU157801 lncRNA downstream 15518 36118200 ~ 36123229 (+) True LOC110533753
TU157918 lncRNA downstream 23232 36125914 ~ 36126237 (+) True G137183
TU157925 lncRNA downstream 27215 36129897 ~ 36130119 (+) True G137190
XM_036947247.1 mRNA upstream 32902 35928900 ~ 36069412 (+) True iglon5
XM_036947245.1 mRNA upstream 237045 35855203 ~ 35865269 (+) False LOC100653444
XM_021561032.2 mRNA upstream 245894 35855203 ~ 35856420 (+) False LOC100653444
XM_036947229.1 mRNA upstream 256428 35828979 ~ 35845886 (+) False LOC110488684
XM_021561090.2 mRNA downstream 6607 36109289 ~ 36113122 (+) True LOC110488747
XR_005034524.1 mRNA downstream 15384 36118066 ~ 36122250 (+) False LOC110533753
XM_021561206.2 mRNA downstream 114338 36217020 ~ 36227769 (+) False LOC110488805
XM_021561216.2 mRNA downstream 114402 36217084 ~ 36227769 (+) False LOC110488805
XM_021561231.2 mRNA downstream 114439 36217121 ~ 36227769 (+) False LOC110488805
TU157787 other upstream 2037 36099611 ~ 36100277 (+) True G137058
TU157722 other upstream 64573 35982832 ~ 36037741 (+) True G136994
TU157485 other upstream 245914 35855149 ~ 35856400 (+) False LOC100653444
TU157486 other upstream 245914 35855228 ~ 35856400 (+) False LOC100653444
TU157479 other upstream 314844 35785691 ~ 35787470 (+) True LOC110488639
TU158178 other downstream 279210 36381892 ~ 36385856 (+) False LOC110488849
TU158176 other downstream 292604 36395286 ~ 36401971 (+) True LOC110488849
TU159857 other downstream 1674379 37777061 ~ 37824010 (+) False G139004
TU159860 other downstream 1674379 37777061 ~ 37824010 (+) False G139004
TU159861 other downstream 1674379 37777061 ~ 37824010 (+) False G139004

Expression Profile