RNA id: TU235534


Basic Information

Item Value
RNA id TU235534
length 986
lncRNA type intronic
GC content 0.40
exon number 2
gene id G208037
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 95717482 ~ 95718864 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctagttaactacacatggttgatgatattactagtttatctagcgtgtcctgcgttgcatataatcgatgtggtgcgtatcgttgctccaatgtgtacctaaccataaacatcaatgcctttcttaaaatcaatacacagaagtatatatttttaaacctgcatagttagctaaaagaaatccaggttagcaggcaatattaaccaggtgaaattgtgtcacttctcttgcgttcattgcacgcagagtcagtgtatgtgcaacagtttgggccgcctaatttgccagaattttacgtaattatgacataacattgaaggttgtgcaatgtaacaggaatatttagatttatggatgccacccgttagataaaatacggaacggttccgtatttcactgaaagaataaacattttgttttcgagaagatagtttccggattcgaccatattaatgacctaaggctcatatttctgtgtgttatcatgttataatttagtctatgatttgatagagtagtctgaccgagcgatggtaggcaccagcaggctcgtaagcattcattcaaacagcactttcgtgcgtttgccagcagctgtttatgacttcaagcctatcaactcccaagattaggctggtgtaaccgatgtgaaatggctagctagttagcggggtacgcgctaatagcgtttcaaacgtcactcgctctgagacttagagtggttgttccccttgctctgcatgggtaacgctgcttcgagggtggctgttgtcgatgtcttcctggttcgagcccagggaggagcgaggagagcgacggaagctatactgttacactggcaatactaaagtgcctataagaacatccaatagtcaaaggtatatgaaatacaaatgttatagagataaatagtcctataattcctataataactacaacctaaaacttcttacctgggaatattgaagactcatgttaaaaggaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235357 lncRNA downstream 15428 95698123 ~ 95702054 (-) True G207883
TU235511 lncRNA downstream 22385 95653258 ~ 95695097 (-) True G208014
TU235348 lncRNA downstream 30618 95680851 ~ 95686864 (-) False G207876
TU235354 lncRNA downstream 82067 95634521 ~ 95635415 (-) True G207880
TU235359 lncRNA downstream 83130 95634077 ~ 95634352 (-) True G207885
TU235542 lncRNA upstream 11585 95730449 ~ 95730692 (-) True G208045
TU235543 lncRNA upstream 12511 95731375 ~ 95731596 (-) True G208046
TU235561 lncRNA upstream 44930 95763794 ~ 95764050 (-) True G208060
TU235566 lncRNA upstream 49992 95768856 ~ 95769161 (-) True G208065
TU235597 lncRNA upstream 126795 95845659 ~ 95846084 (-) True G208094
XM_036960040.1 mRNA downstream 52979 95635896 ~ 95664503 (-) True LOC110502485
XM_021580524.2 mRNA downstream 85510 95628449 ~ 95631972 (-) False parietopsin
LOC118944198 mRNA downstream 446210 95271093 ~ 95271272 (-) True LOC118944198
XM_036959906.1 mRNA downstream 592935 95097379 ~ 95124547 (-) True LOC110502417
XM_021577703.2 mRNA downstream 697053 95015675 ~ 95020429 (-) True LOC110500368
XR_002475062.2 mRNA upstream 163267 95882131 ~ 95883679 (-) True LOC110533932
XM_036960073.1 mRNA upstream 332438 96051302 ~ 96092405 (-) True LOC110502500
XM_036960080.1 mRNA upstream 411447 96130311 ~ 96370206 (-) False LOC110502509
LOC110500576 mRNA upstream 914977 96633841 ~ 96640404 (-) True LOC110500576
XM_036960096.1 mRNA upstream 928266 96647130 ~ 96897073 (-) False LOC110500541
TU235350 other downstream 30618 95682037 ~ 95686864 (-) False G207876
TU235346 other downstream 30618 95682623 ~ 95686864 (-) True G207876
TU235358 other downstream 107696 95604228 ~ 95609786 (-) True G207884
TU235447 other downstream 193255 95523968 ~ 95524227 (-) True G207959
TU235317 other downstream 308768 95377723 ~ 95408714 (-) True G207858
TU235579 other upstream 110510 95829374 ~ 95832362 (-) True G208077
TU236021 other upstream 415213 96134077 ~ 96134472 (-) True G208472
TU236221 other upstream 703002 96421866 ~ 96422224 (-) True G208658
TU237272 other upstream 1697957 97416821 ~ 97417188 (-) True G209560
TU237607 other upstream 1782308 97501172 ~ 97502394 (-) True G209802

Expression Profile