RNA id: TU235579


Basic Information

Item Value
RNA id TU235579
length 517
RNA type TUCP
GC content 0.43
exon number 2
gene id G208077
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 95829374 ~ 95832362 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atccataaaaagtgtcatttaaagtttgccacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaatggaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctcatcaccctgaacacaccatccccactgtcaaacatggtggtggcagcatcatggtttgggcctgcatttcttcagcagggacagggaagatggttaaaattgatgggaagatggatggagccaaatacaggaccattctggaagaaaacctgatggagtctgcaaaagacctgagactgggacggagatttgtcttccaacaagacaatgatccaaaacataaagcaaaatctacaatggaatggttcaaaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctca

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235566 lncRNA downstream 60213 95768856 ~ 95769161 (-) True G208065
TU235561 lncRNA downstream 65324 95763794 ~ 95764050 (-) True G208060
TU235543 lncRNA downstream 97778 95731375 ~ 95731596 (-) True G208046
TU235542 lncRNA downstream 98682 95730449 ~ 95730692 (-) True G208045
TU235534 lncRNA downstream 110510 95717482 ~ 95718864 (-) True G208037
TU235597 lncRNA upstream 13297 95845659 ~ 95846084 (-) True G208094
TU235611 lncRNA upstream 19716 95852078 ~ 95852287 (-) True G208107
TU235676 lncRNA upstream 37216 95869578 ~ 95870215 (-) True G208168
TU235679 lncRNA upstream 39458 95871820 ~ 95899031 (-) True G208170
TU235729 lncRNA upstream 128467 95960829 ~ 95961041 (-) True G208215
XM_021577854.2 mRNA downstream 108259 95703359 ~ 95721115 (-) True LOC110500466
XM_036960040.1 mRNA downstream 164871 95635896 ~ 95664503 (-) True LOC110502485
XM_021580524.2 mRNA downstream 197402 95628449 ~ 95631972 (-) False parietopsin
LOC118944198 mRNA downstream 558102 95271093 ~ 95271272 (-) True LOC118944198
XM_036959906.1 mRNA downstream 704827 95097379 ~ 95124547 (-) True LOC110502417
XR_002475062.2 mRNA upstream 49769 95882131 ~ 95883679 (-) True LOC110533932
XM_036960073.1 mRNA upstream 218940 96051302 ~ 96092405 (-) True LOC110502500
XM_036960080.1 mRNA upstream 297949 96130311 ~ 96370206 (-) False LOC110502509
LOC110500576 mRNA upstream 801479 96633841 ~ 96640404 (-) True LOC110500576
XM_036960096.1 mRNA upstream 814768 96647130 ~ 96897073 (-) False LOC110500541
TU235350 other downstream 142510 95682037 ~ 95686864 (-) False G207876
TU235346 other downstream 142510 95682623 ~ 95686864 (-) True G207876
TU235358 other downstream 219588 95604228 ~ 95609786 (-) True G207884
TU235447 other downstream 305147 95523968 ~ 95524227 (-) True G207959
TU235317 other downstream 420660 95377723 ~ 95408714 (-) True G207858
TU236021 other upstream 301715 96134077 ~ 96134472 (-) True G208472
TU236221 other upstream 589504 96421866 ~ 96422224 (-) True G208658
TU237272 other upstream 1584459 97416821 ~ 97417188 (-) True G209560
TU237607 other upstream 1668810 97501172 ~ 97502394 (-) True G209802
TU237655 other upstream 1786497 97618859 ~ 97619212 (-) True G209841

Expression Profile