RNA id: TU235826


Basic Information

Item Value
RNA id TU235826
length 424
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G208308
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 96049416 ~ 96049839 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatctcagtatatatacacctgttctgaaaggccccagagtctgcaacaccactaagcaagtggcatcatcaagcaagcagcaccatgaagaccaaggaactctccaaacaggtcagggacaaagttgtggagaagtacagatcagggttgggttataaaaaaagatcaaactttgaacatcccacggagcactatAAAATCCATGATTATAAAATGGAAagaacctgccaagagagggccgcccaccaaaactcactgaccaggcaaggagggcattaatcagagaggcaacaaagagaccaaagataaccccgaaggagctgcaaagctccacagcggagatttggagtatctgtccataggaccactttatgccgtacactccacagagctgggctttacggaagagtggccagaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235849 lncRNA downstream 22076 96027046 ~ 96027340 (-) True G208320
TU235848 lncRNA downstream 23396 96024926 ~ 96026020 (-) True G208319
TU235845 lncRNA downstream 35957 96011026 ~ 96013459 (-) True G208316
TU235844 lncRNA downstream 36435 96011026 ~ 96012981 (-) False G208316
TU235824 lncRNA downstream 46588 96000916 ~ 96002828 (-) True G208306
TU235870 lncRNA upstream 18992 96068831 ~ 96115749 (-) False G208341
TU235872 lncRNA upstream 18992 96068831 ~ 96115749 (-) False G208341
TU235874 lncRNA upstream 18992 96068831 ~ 96069357 (-) True G208341
TU235895 lncRNA upstream 60157 96109996 ~ 96117440 (-) True G208361
TU235902 lncRNA upstream 73203 96123042 ~ 96124588 (-) True G208368
XR_002475062.2 mRNA downstream 165737 95882131 ~ 95883679 (-) True LOC110533932
XM_021577854.2 mRNA downstream 328301 95703359 ~ 95721115 (-) True LOC110500466
XM_036960040.1 mRNA downstream 384913 95635896 ~ 95664503 (-) True LOC110502485
XM_021580524.2 mRNA downstream 417444 95628449 ~ 95631972 (-) False parietopsin
LOC118944198 mRNA downstream 778144 95271093 ~ 95271272 (-) True LOC118944198
XM_036960073.1 mRNA upstream 1463 96051302 ~ 96092405 (-) True LOC110502500
XM_036960080.1 mRNA upstream 80472 96130311 ~ 96370206 (-) False LOC110502509
LOC110500576 mRNA upstream 584002 96633841 ~ 96640404 (-) True LOC110500576
XM_036960096.1 mRNA upstream 597291 96647130 ~ 96897073 (-) False LOC110500541
XM_036960106.1 mRNA upstream 597291 96647130 ~ 96897073 (-) False LOC110500541
TU235579 other downstream 217054 95829374 ~ 95832362 (-) True G208077
TU235350 other downstream 362552 95682037 ~ 95686864 (-) False G207876
TU235346 other downstream 362552 95682623 ~ 95686864 (-) True G207876
TU235358 other downstream 439630 95604228 ~ 95609786 (-) True G207884
TU235447 other downstream 525189 95523968 ~ 95524227 (-) True G207959
TU236021 other upstream 84238 96134077 ~ 96134472 (-) True G208472
TU236221 other upstream 372027 96421866 ~ 96422224 (-) True G208658
TU237272 other upstream 1366982 97416821 ~ 97417188 (-) True G209560
TU237607 other upstream 1451333 97501172 ~ 97502394 (-) True G209802
TU237655 other upstream 1569020 97618859 ~ 97619212 (-) True G209841

Expression Profile