RNA id: TU237016



Basic Information


Item Value
RNA id TU237016
length 712
lncRNA type intronic
GC content 0.43
exon number 2
gene id G209348
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 96845751 ~ 96846592 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ttcaagAGGCTGTCAGCTTATCATCAGgatgaagtactgtactgtaggatcaAGAGGCTGTCAGCTTATCATCAGgatgaagtactgtactgtaggttcaagAGGCTTATCATCAGgatgaagtactgtactgtaggatcaAGAGGCTTATCATCAGgatgaagtactgtactgtaggatcaAGAGGCTTATCATCaggatgtactgtactgtaggatcaAGAGGCTTACCATCAGGAttaagtactgtactgtaggatcaAGAGGCTTATCATCAGGATGAAGTGTTGTACTGTAGGTTCAAGAGGCTTATCATCAGgatgaagtactgtactgtaggatcaAGAGGCTGTCAGCTTATCATCAGgatgaagtactgtactgtaggatcaAGAGGCTGTCAGCTTATCATCAGgatgaagtactgtactgtaggatcaAGAGGCTGTCAGCTTATCGTCAGgatgaagtactgtactgtaggatcaAGAGGCTGTCAGCTTATCATCAGgatgaagtactgtactgtaggttcaagAGGCTTATCATCAGgatgaagtactgtactgtaggttcaagAGGCTGTCAGCTTATCATCAGgatgaagtactgtactgtaggttcaagAGGCTTATCATCAGGAtggagtactgtactgtaggttcaagAGGCTTATCATCAGgatgaagtactgtactgtaggttcaagAGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU237013 lncRNA downstream 5545 96839145 ~ 96840206 (-) True G209346
TU236956 lncRNA downstream 148038 96696937 ~ 96697713 (-) True G209298
TU236939 lncRNA downstream 186534 96654622 ~ 96659217 (-) True G209282
TU236877 lncRNA downstream 199717 96627285 ~ 96646034 (-) True G209226
TU236923 lncRNA downstream 226520 96617498 ~ 96619231 (-) True G209267
TU237017 lncRNA upstream 142 96846734 ~ 96847325 (-) True G209349
TU236874 lncRNA upstream 30946 96877538 ~ 96878868 (-) True G209223
TU237045 lncRNA upstream 110061 96956653 ~ 96958015 (-) True G209373
TU237101 lncRNA upstream 239448 97086040 ~ 97086516 (-) True G209416
TU237110 lncRNA upstream 261956 97108548 ~ 97109049 (-) True G209422
LOC110500576 mRNA downstream 205347 96633841 ~ 96640404 (-) True LOC110500576
XM_036960080.1 mRNA downstream 475545 96130311 ~ 96370206 (-) False LOC110502509
XM_036960073.1 mRNA downstream 753346 96051302 ~ 96092405 (-) True LOC110502500
XR_002475062.2 mRNA downstream 962072 95882131 ~ 95883679 (-) True LOC110533932
XM_021577854.2 mRNA downstream 1124636 95703359 ~ 95721115 (-) True LOC110500466
XM_036960120.1 mRNA upstream 172999 97019591 ~ 97077900 (-) False pik3c2g
XM_036960127.1 mRNA upstream 181594 97028186 ~ 97077900 (-) True pik3c2g
XM_036960153.1 mRNA upstream 242615 97089207 ~ 97387953 (-) False LOC110502515
XM_036934797.1 mRNA upstream 647752 97494344 ~ 97496498 (-) True LOC118937309
LOC118944190 mRNA upstream 775414 97622006 ~ 97622184 (-) False LOC118944190
TU236221 other downstream 423527 96421866 ~ 96422224 (-) True G208658
TU236021 other downstream 711279 96134077 ~ 96134472 (-) True G208472
TU235579 other downstream 1013389 95829374 ~ 95832362 (-) True G208077
TU235350 other downstream 1158887 95682037 ~ 95686864 (-) False G207876
TU237272 other upstream 570229 97416821 ~ 97417188 (-) True G209560
TU237607 other upstream 654580 97501172 ~ 97502394 (-) True G209802
TU237655 other upstream 772267 97618859 ~ 97619212 (-) True G209841
TU238041 other upstream 1297728 98144320 ~ 98145517 (-) True LOC118936884
TU238753 other upstream 2071856 98918448 ~ 98946069 (-) True LOC118943885

Expression Profile