RNA id: TU237045



Basic Information


Item Value
RNA id TU237045
length 915
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G209373
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 96956653 ~ 96958015 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtatttacaatggtgtttgttcttcactggttgaccttttcttgtggcaacaggtcacacatcttgctgctgtgatgtcacactgtggaatttcacccagtagataagggagtttatcaaaattggatttgttttcgaattctttgtggatctgtgtaatctgagagaaatatgtgtctctaatatggtcatacattgggcaggaggttaggaagtgcagctcagtttccacctcattttgtgggcagcgagcacatagcctgtcttctcttgagagccatgtctgtctacggcggcctttctcaatagcaaggctatgctcactgagtctgtacatagtcaaagctttgcATCAGATTCTATGTATCAGTTTCTATGCATCAGATTCTATGTATCAGTTTCTATGCATCAGATTCTATGCATCCGTTTCTATGCATCAGCTTCTATGCATCAGATTCTATGCATCAGTTTCTATGCATCAGATTCTATGCATCAGATTCTATGCATCAGTTTCTATGCATCAGATTCTATGCATCAGATTCTATGCATCAGATTCTATGCATCAGATTCTACGCATCAGATTCTATGCATCAGTTTCTATGCATCAGATTCTACGCATCAGATTCTATGCATCCGATCCAATGCATTATTTCTTAACCTTGTGTTTTGACGCTAACCTGACTGAATAGCTCTGTTCTAAATTAGAGTTTGAAACAGTTTTGTTCATTAGAAGTTGAAAAAGTGATGCAATTATACACTATAGTGTATGTCTGGCATAGTGAGCTCCTTGAATCATTTTTCTAATTTGCAGATCGGAACCGCTGTGAAAGTCAATTAATGAATCCATTATTTAATTAGTCTGTATGGTGCTTAACCATCTCCTTTAAAGGGGAACCTCGACTGAACCTTTCCCGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU236874 lncRNA downstream 77785 96877538 ~ 96878868 (-) True G209223
TU237017 lncRNA downstream 109328 96846734 ~ 96847325 (-) True G209349
TU237016 lncRNA downstream 110061 96845751 ~ 96846592 (-) True G209348
TU237013 lncRNA downstream 116447 96839145 ~ 96840206 (-) True G209346
TU236956 lncRNA downstream 258940 96696937 ~ 96697713 (-) True G209298
TU237101 lncRNA upstream 128025 97086040 ~ 97086516 (-) True G209416
TU237110 lncRNA upstream 150533 97108548 ~ 97109049 (-) True G209422
TU237133 lncRNA upstream 208091 97166106 ~ 97166479 (-) True G209443
TU237165 lncRNA upstream 287462 97245477 ~ 97248595 (-) True G209474
TU237173 lncRNA upstream 303679 97261694 ~ 97265605 (-) True G209478
XM_036960096.1 mRNA downstream 59580 96647130 ~ 96897073 (-) False LOC110500541
XM_036960106.1 mRNA downstream 59580 96647130 ~ 96897073 (-) False LOC110500541
XM_036960115.1 mRNA downstream 59580 96647130 ~ 96897073 (-) False LOC110500541
XM_036960116.1 mRNA downstream 59580 96647130 ~ 96897073 (-) True LOC110500541
LOC110500576 mRNA downstream 316249 96633841 ~ 96640404 (-) True LOC110500576
XM_036960120.1 mRNA upstream 61576 97019591 ~ 97077900 (-) False pik3c2g
XM_036960127.1 mRNA upstream 70171 97028186 ~ 97077900 (-) True pik3c2g
XM_036960153.1 mRNA upstream 131192 97089207 ~ 97387953 (-) False LOC110502515
XM_036934797.1 mRNA upstream 536329 97494344 ~ 97496498 (-) True LOC118937309
LOC118944190 mRNA upstream 663991 97622006 ~ 97622184 (-) False LOC118944190
TU236221 other downstream 534429 96421866 ~ 96422224 (-) True G208658
TU236021 other downstream 822181 96134077 ~ 96134472 (-) True G208472
TU235579 other downstream 1124291 95829374 ~ 95832362 (-) True G208077
TU235350 other downstream 1269789 95682037 ~ 95686864 (-) False G207876
TU237272 other upstream 458806 97416821 ~ 97417188 (-) True G209560
TU237607 other upstream 543157 97501172 ~ 97502394 (-) True G209802
TU237655 other upstream 660844 97618859 ~ 97619212 (-) True G209841
TU238041 other upstream 1186305 98144320 ~ 98145517 (-) True LOC118936884
TU238753 other upstream 1960433 98918448 ~ 98946069 (-) True LOC118943885

Expression Profile