RNA id: TU238648


Basic Information

Item Value
RNA id TU238648
length 208
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G210595
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98577391 ~ 98577598 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cattaacaatgtctacactgtatttctgatcaacttgatgttattttaatggacaaaaaacatgcttttctttcaaaaacaaggacatttctaggtgaccccaaacttttgaacagtagtgtatgtagcttgtgatacagtgaattataaatgaaataatctgtctgtaaacaattgttggaaaaatgtcttgtgtcatgcacaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238647 lncRNA downstream 68 98577107 ~ 98577323 (-) True G210594
TU238637 lncRNA downstream 8695 98561391 ~ 98568696 (-) True G210588
TU238642 lncRNA downstream 9235 98567354 ~ 98568156 (-) True G210590
TU238639 lncRNA downstream 11802 98558573 ~ 98565589 (-) False G210588
TU238625 lncRNA downstream 37736 98539393 ~ 98539655 (-) True G210580
TU238649 lncRNA upstream 281 98577879 ~ 98578163 (-) True G210596
TU238651 lncRNA upstream 4508 98582106 ~ 98582336 (-) True G210598
TU238652 lncRNA upstream 5089 98582687 ~ 98582903 (-) True G210599
TU238658 lncRNA upstream 11002 98588600 ~ 98589089 (-) True G210605
TU238660 lncRNA upstream 12061 98589659 ~ 98589904 (-) True G210607
XM_036960421.1 mRNA downstream 41701 98521998 ~ 98535690 (-) True edc3
XM_036960381.1 mRNA downstream 63530 98474734 ~ 98513861 (-) True LOC110500720
XM_021617578.2 mRNA downstream 150733 98424015 ~ 98426658 (-) False lmo2
NM_001160508.1 mRNA downstream 151016 98424340 ~ 98426375 (-) True lmo2
XM_021578235.2 mRNA downstream 224906 98313023 ~ 98352485 (-) True LOC110500713
XM_036960425.1 mRNA upstream 10318 98587916 ~ 98601250 (-) False LOC110500748
XM_021580609.2 mRNA upstream 65392 98642990 ~ 98689136 (-) True LOC110502529
XM_036960449.1 mRNA upstream 115158 98692756 ~ 98723102 (-) False LOC110500839
XM_036960450.1 mRNA upstream 115158 98692756 ~ 98723102 (-) True LOC110500839
XM_036960440.1 mRNA upstream 218251 98795849 ~ 98797788 (-) False LOC110500636
TU238041 other downstream 431874 98144320 ~ 98145517 (-) True LOC118936884
TU237655 other downstream 958179 97618859 ~ 97619212 (-) True G209841
TU237607 other downstream 1074997 97501172 ~ 97502394 (-) True G209802
TU237272 other downstream 1160203 97416821 ~ 97417188 (-) True G209560
TU236221 other downstream 2155167 96421866 ~ 96422224 (-) True G208658
TU238753 other upstream 340850 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other upstream 364876 98942474 ~ 98943797 (-) True LOC118943882
TU238870 other upstream 448134 99025732 ~ 99026118 (-) True G210765
TU239331 other upstream 545635 99123233 ~ 99123658 (-) True G211127
TU239562 other upstream 1038078 99615676 ~ 99615914 (-) True LOC118936886

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU131249 True 1986 lncRNA 0.34 1 NC_053120.1 22091389 ~ 22093374 (+)