RNA id: XM_021593788.2


Basic Information

Item Value
RNA id XM_021593788.2
length 4511
RNA type mRNA
GC content 0.40
exon number 6
gene id LOC110514348
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23144516 ~ 23164384 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGATGTGGGGCTGGAAGTCAAACTATGGAACAGTAGTGCAGGTGACTAGTTATCATGGTATGGTAAATTGTTAGGAGGATGTCCTTGGAGACGAGGGGGGTGGGCAGGGTCATTGACTTTGTGACTGGTGTATAAATGAATCAGTCAGATTCAGTTGTCTACAGAGCTTTTACCTACATCAGCATCAAAAGTGACCTTGTTTTTTTAAGgatgATGAGATCGACCACGATGTTCCTCTTGTTGACTCTCCTGGGATTGGCATGCTCTATTGGCCCTACAGTCCCAAGAAATCTTGCCTTGCGTGGAAAAGCTACACAGTCAGACCTCATCGAGAGCCCATGGCACGGTTTGAGTCATGCCTCCAATGCCATTGATGGGAACCGCGATTCACATTTCCATCATGGGTCCTGTACTGCCACTGACGAATCCACTAACCCTTGGTGGAGAGTGGACCTGCTTGACACCTACATAGTCacctccatcaccatcaccaacaGAGGGGATGCTGTTCCTGAGAGGCTTAACGGGGCTGAGATACGAATAGGAAATTCTTTAGTGGACAATGGCATTCATAACCCTCTGGTTAAAACAATTCCCTCTGTTCCAGCCGGCAGTTCTCTCACCCTTGCTTTTGACCCAAGTTTCGAAGGACGTTATGTGATTGTGGTTCTACCAGGCCAGCATAGACTTCTGACACTCTGTGAAGTGGAAGTTTACGGATACCTTGCCCCAACTGGAGAGAATGTGGCTCTATATGGAAAGGCCACCCAGTCGTCTTTGAATGAGTTTGGCATTCCAGGCAATGCTATTGACGGGAATCGCAACGCTATTTGGATAGGAGGGTCCTGCACCCACACTCTACAGGACATCAACGCCTGGTGGAGGGTGGACCTTCTGAAGACCTACAAAGTGTtctccatcatcatcaccaacacaGTCGACAGTGTTCCCAGCAGACTCAATGGAGCTGAGATTCGCATTGGAGATTCCCTGAAAGACAACGGCATCAATAATCCTAGGTGTGCTGTGATCTCCTCTATCCCAGCTGGCAATTCAAGCACCTTCCAGTGTCCGGGCATGGAGGGTCGATATGTCATCGTGGTCATTCCAGGGAGGAAGGAGTACCTGACCTTGTGTGAGGTGGAGGTGTACGGATCACCCCTGGATGGGACTGGGCCTACATGTAACTAAATCAGATCGTTAACTCTTAACAGCACCCTGCAATGTTTGGGGAATGTATTGTCTTACGAAAACAATTCAACTTTTCAGTATACTATCACTATTCTGTAAGTTCGTCTTGCACACTGTTTTTGGATGTTTGGGTATAAATTGACGAACACTTTTTGTAACACTTTTTAAGAACAACTTTCATGAATTATTATGTAGCCTAATTATTGGTTAGACAGTTATCATTCATACCTTGAAATGCATGTAATGCTGTGAAGTAATGCTATTATGTTAGAATGAATGGTCCCGCTTTAAATGACGTTCAgattataaaggcttcataaagccttAATAATGCCTTCATAAGCAGTACATAAATGTTTACAAAGCATCTATAACcatatgtcatgctttataaaaggttcataaatgtggcataactgtgtgacataatCACCTATATCAAATGTGATATAACCCACTAAGTCAAATATGATATAAAcatgtgctttataaagggtgacGTGCTGAAGGATGGAAAACGCTCTAAAGGGATGTCATCTTAGTCACATTACACCTAATCTCGTTCCCAGACACTTCCGCCCAAATGCTCAGAAGGTCTGATGGACCAATGCATCAAACTTGGCCTTCATTAGTCAGGGTTAGgtttcaaatcacattttaacaAGATAAAGTGTGGAAATGGGCAGGGTTTAGCCAAAATTATGACTTTTTTGTTTGTTAAGTAGTGACGATGACAAATACTTTACTCAGTAAGGTCACTGCTATAGAATTCTATAGTCACTCCCACTATGCCCAATTTTGAATGGTTGATATCCCAGGCGTCAATGTGCTGTGTGAGCAATAGCCTGAGAGCAACATTACACCAAGAAACACTTACCTTGGTGAAAGTCCCCAATCTAAAGACATTGAAAGTGTCTTTCTTCTGGAACCAAGTTACATGTTCCTCATTACACAAACATGAAAACAACAAAAACGAGCCATACCACACAGTGCTGGGCCCTGTGAAGTCTTTGACACATTCACCCATTTCCCCGCTGAAAGATCAGCCACAAAATGTTGTAATCAAGTCTGTCTACTTTGGTCATTTATGACACATGCATAAATGCCTTATATTATATGACGCTGTACTTAATATAAGGTCAGACACCTTTGGTCATTCCTAACACATGCATAATGGCTTAATGATGTTAACACAACTGTATTAACACATAGGGAATTGGCATTAAATGATAAAACAAGAAAACATTAAAGAAATGTTTAAaccatacagtacatttattttatttatacatttttaaaacaatacaaatacatGACATTTCAAAAAGTCCAGCAATGCCATTACattgaacattacacagggctgtgaatagtccAGCTTGTCCCTGAGCTGGCAGGAGAACGGTTCTTGACTCCCTTCTTGCTGGAGGTACTGGGTGTTGGTTCCAACCTAAATGAACAACAAAGTTAGCAGGTCTGTTAGGAAAGGTCGTTTGTCACACCATCTAGATAAGGGCATTTCTGTGCTGCACAAGAAACTCTAAACGGGAAGATGGGGAAACTCCATTAAAAATGTATTGTTACAATACAGCTATGAGACATGTATGTATGTAGGGGATATGTATTTAGCTGAGCCTGCTAGCTAACTACATTTTGTCTAGCTAGTAATTGCTGTGAAGTCACCGAAATGATTTGAAATAATGATTgaggtagctacagtatgtaatcTAACTCAACACTTAACTACTACCAACACATTTAAATCacaataaataaaggttaacttaCTTGTTTTGGGCATTATTCCCATTCAAACTCCTAGAATTTTGGAAATGTTCCAAATAAAGTCCCCCACGTAATAACAGAAAAGTCTCAAAAACCATTCATGATATATGAAAAATAATTGTCTAAATATTAAACATATTTTTAAGTGACATTTGCATTAAATGTGGGTTTTAAAACATGTTCCAAGGTCAAATAAGTGCTCCCAATGCAAATCACCATATATAGAATACATATTGGCTTAGAGCAATAACTATTCTGGGTGCAGCAGTACAAGTATTGCAGGGAATACTCAATAGGGTCTGTAGAAtgaatgtacagtggggagaacaagtatttgatacactgccgattttgcaggttttcctacttacaaagcatgtagaggtctgtattttttttttatcataggtacacttcaactgtgagagatggaatctaaaacaaaaatccagaaaatcacattgtatgatttttaagtaattaatttgcatcttattgcatgacataagtatttgatacatcagaaaactGTATATATACGTTGTCATTTCATGGGGCTCAAAATAATTTTGGAATGTGGCCGGCCTTTTACTCTACCCATTCTATTGGCGGCCAGATCACATCATGAGTGCTTACTGCACTACAGAAAGAAAACCTGCTAACAAAACAACAGTGCAGAGCATGCTCAGTGAATTAAAGAGCAACTACACTTACAAATATACGTTTCTTCGATTTTTCACAGACCTCAAAAGTCTGATGTGGTTTAAGAATTGTTGTGAACACAGAAAATGaaatgttgtttttctattaagAAAGTGCGAAAACACTGGGGGAAACCAGAAAGAATGGGGAAAATCTGAAACCCGGAAAAACAAAACCAAGAAAACAGAATTTGGTGGGGAAAAAGAAGTAGGCAACTACAACAAACAGACTAACGATTGTAAAAGGCCCTACCAAGGTTTTTTGCTTTGCATGACTGCACTTTAGAGTCTGTGTTCTCCTGCAGCACAGCATTTTGGGGGAAGCTGAAGTCAAGTCCAATATTGACTATGCACCCAagagggaaaggggaaaggggttGGGCCAATCTAGAAatgacacttttatccaaagcgacttacagtcagtcATACGTGAATACATTTTTACGTATTATAGGGTGTTGAATCGAATCGAACCCAATATCCTGTCGTTGCAATGCTCTACCAAGATGTATGACAGGGTTATAAATGCTTTGTGAAGCCACAATTGAATATGATTTATAAGCTCTTTATTAAGCGGTGCTCATGCCACCCTTTATAAAGGACAGGTTTGTATCATTTTTGACATAGTGGGTTTTGTCCCCTTAGACATTGGTGGTTATGGAGAACAGTgatgccacatttatgaaccctttataaagcatggCATACGGTTATAGATGATGTGTAACacatttatgtagtgtttatgaaggTTTTAGGAAGCCTTTATAAGCTGCACGTCATTTAAAGTGGGACCAAATTCATGAATAAACTTAATTAATACATCTGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270881 lncRNA downstream 126 23143960 ~ 23144390 (-) True G237028
TU270886 lncRNA downstream 612 23143514 ~ 23143904 (-) True G237033
TU270894 lncRNA downstream 21440 23122483 ~ 23123076 (-) True G237041
TU270856 lncRNA downstream 79556 23064754 ~ 23064960 (-) True G237009
TU270841 lncRNA downstream 107813 23036088 ~ 23036703 (-) True G236994
TU270922 lncRNA upstream 26227 23190611 ~ 23191037 (-) True G237068
TU270923 lncRNA upstream 29639 23194023 ~ 23194443 (-) True G237069
TU270934 lncRNA upstream 43366 23207750 ~ 23207980 (-) True G237080
TU270950 lncRNA upstream 71354 23235738 ~ 23235942 (-) True G237092
TU270967 lncRNA upstream 101685 23266069 ~ 23280190 (-) True G237108
LOC118944658 mRNA downstream 1550 23140834 ~ 23142966 (-) True LOC118944658
XM_036972421.1 mRNA downstream 3628 23138636 ~ 23140888 (-) True LOC110514382
XM_021593777.2 mRNA downstream 93484 23037760 ~ 23051032 (-) False LOC110514322
XM_036972416.1 mRNA downstream 93484 23037760 ~ 23051032 (-) False LOC110514322
XM_036972418.1 mRNA downstream 93484 23037760 ~ 23051032 (-) True LOC110514322
XM_021593802.2 mRNA upstream 8226 23172610 ~ 23192782 (-) False LOC110514368
XM_036972420.1 mRNA upstream 8226 23172610 ~ 23196343 (-) True LOC110514368
XM_036972432.1 mRNA upstream 177739 23342123 ~ 23368891 (-) True LOC110503934
XM_021593864.2 mRNA upstream 241869 23406253 ~ 23495800 (-) False LOC110514498
XM_036972455.1 mRNA upstream 241869 23406253 ~ 23563489 (-) False LOC110514498
TU269608 other downstream 569527 22573833 ~ 22574989 (-) True G235881
TU268720 other downstream 1389015 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 1401105 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 1645684 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 1674571 21469661 ~ 21469945 (-) True G234600
TU271267 other upstream 607140 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 1016172 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 1016172 24180556 ~ 24183964 (-) True G237657
TU271769 other upstream 1356835 24521219 ~ 24521544 (-) True G237832
TU272242 other upstream 1605178 24769562 ~ 24769971 (-) False LOC110515154

Expression Profile