RNA id: TU304858


Basic Information

Item Value
RNA id TU304858
length 556
RNA type TUCP
GC content 0.51
exon number 1
gene id LOC118944672
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49494001 ~ 49503025 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTTTCTCAGGAAAATGAGTATGGAGGGAGCCATACAGGCCCTGTTACAAGCGGTGGCCGCCCAACAAGAGGCAACTAGAGCTCAACAAATAGCTCATCAGGATGCAATGCGAATGTATCAGGACACGTTACAGGTCCAGCACTGCACCAACCAGCTGCTCAgagaagagcaagagagaaacacCCGGGAGTTAAGAGAAGGCCTAAAGGGGCTAGCGGACCAAATTGGGGCTCAATTACCAGCTGCAAATACCCAGAAGCGGGCCAATCATTTTCTTCAAAAAATGACAGCACAGGATGATGTGGAAGCATATCTTACCACCTTCGAAAGGacggcagagagggagaagtggccGAAAGAAGAATGGGCAGGGCTTCTGGCACCATACCTGGCAGGGGATGCTCAAAAAGCATATTTCGACCTGGAGTTGAAAGATGCACAGGATTACGATAAACTAAAGGGAGAGATCTTGACTAGACTGGGAGTGACCGATACCGTGAGGGCACACCGCTTCCACCAGTGGTCCTACCGACCGGGACAACCCCCACGAACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304855 lncRNA downstream 1972 49500235 ~ 49500444 (-) True G268313
TU304854 lncRNA downstream 4090 49497880 ~ 49498326 (-) True G268312
TU304841 lncRNA downstream 26717 49475335 ~ 49475699 (-) True G268299
TU304832 lncRNA downstream 36220 49465888 ~ 49466196 (-) True G268293
TU304825 lncRNA downstream 42609 49459599 ~ 49459807 (-) True G268286
TU304859 lncRNA upstream 1056 49504027 ~ 49504226 (-) True G268317
TU304862 lncRNA upstream 7977 49510948 ~ 49511446 (-) True G268320
TU304870 lncRNA upstream 22451 49525422 ~ 49525705 (-) True G268328
TU304871 lncRNA upstream 22979 49525950 ~ 49526176 (-) True G268329
TU304872 lncRNA upstream 24962 49527933 ~ 49528246 (-) True G268330
XM_021597161.2 mRNA downstream 24299 49475978 ~ 49478117 (-) True dlx2a
XM_021597152.2 mRNA downstream 89303 49390493 ~ 49413113 (-) True LOC110520101
XM_021597151.2 mRNA downstream 89936 49390493 ~ 49412480 (-) False LOC110520101
XM_036974412.1 mRNA downstream 89938 49390493 ~ 49412478 (-) False LOC110520101
XM_036974411.1 mRNA downstream 144968 49303033 ~ 49357448 (-) True LOC110520100
XM_021597166.2 mRNA upstream 60870 49563841 ~ 49608114 (-) False LOC110520112
XM_021597167.2 mRNA upstream 60870 49563841 ~ 49608114 (-) False LOC110520112
XM_021597168.2 mRNA upstream 62064 49565035 ~ 49608114 (-) False LOC110520112
XM_021597169.2 mRNA upstream 62064 49565035 ~ 49608114 (-) False LOC110520112
XM_036974439.1 mRNA upstream 291686 49794657 ~ 49802026 (-) False sp3a
TU304852 other downstream 6613 49495477 ~ 49495803 (-) True G268310
TU302595 other downstream 1469114 48032047 ~ 48033302 (-) True LOC110505248
TU302286 other downstream 1902601 47599218 ~ 47599815 (-) True G265988
TU299385 other downstream 3964874 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 4398153 45099340 ~ 45104263 (-) True LOC110520012
TU304903 other upstream 60877 49563848 ~ 49565989 (-) False LOC110520112
TU304905 other upstream 60877 49563848 ~ 49567474 (-) True LOC110520112
TU305027 other upstream 364246 49867217 ~ 49871645 (-) True LOC110520119
TU305117 other upstream 397202 49900173 ~ 49901538 (-) True LOC110520121
TU306341 other upstream 937234 50440205 ~ 50442872 (-) True LOC110520139

Expression Profile