RNA id: TU312299


Basic Information

Item Value
RNA id TU312299
length 861
RNA type TUCP
GC content 0.62
exon number 3
gene id LOC110520227
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55068639 ~ 55122013 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTAGGCAACACCACCCCAAGCTGCAGGAGATGTCTGCAGCCCTGGGGAAGCTGAGCTCTAGCGGGGTGTGGGGCCTGCTGGCCAGGGAGCAGGGGACCGAGGTGTCCCCCCGTAACGTGGCCTGGGCTGACCAGCCCTCTGCCTTCAGCGTGCTGGCTCTGAGGCAGGGGAAAAGGAGTCGTGCTCGTTCCACCAACGACCTGGCTGCCCACACCAAggacaccaacaacaccacctcTAACTCCTCCAACACCGCTTTTAAGAAAGGCCACAACCGCTCACGTTCTGATGTCAACTACCGGCCGTCCTACACAGACAACGCTAATGGCCTGCCTGCTGTGGACAAGAACATGCTGAAGAACATTGCTCTCAACGACCAGAGAGAAGAAGCCCATAAGGACAGCAGCAGCGGCAGTGTGGTGAAGCAGGGCTCCCTGGAGCATCGTGAGGGTCAGAAGGGTCGTTGGAGCATCTGCCACCTAGAGCTGACCCCCTGTGAGCTGCGTCTCTACAGCCTGGACAGCAGTGGTAACCGTCAGCTCTGCACCGCCTACTCCCTGTCCCACTGCCAGGGGGTTAGCCAGCCCCAGCCACCACAGGACGGACGAGTCCTCCAGGCCCTCTTCTTCAACAGCTCCACCCGCCTGCAGTTACGTGCCGCCTGCCAGTGGGAGGCGCTAGACTGGAGGAGGCAGATCTGGGAGAGAGTATTGGCTGCCCGGCCCGCCCACAAACAGGCAGAACCGCCTCCAGTCTTATCCCCGTCGTCATCCATCTCCTCTGGAGGTCtcgacaccagaccagaccccattGGTCCTGCTGAGGCTGCCCTGACCCCTCATACCTCGCATCTCCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312293 lncRNA downstream 31450 55068639 ~ 55072044 (-) False LOC110520227
TU312294 lncRNA downstream 31450 55068639 ~ 55072044 (-) False LOC110520227
TU312295 lncRNA downstream 31450 55068639 ~ 55072044 (-) False LOC110520227
TU312242 lncRNA downstream 100937 55000183 ~ 55002557 (-) True G275020
TU312213 lncRNA downstream 169694 54929696 ~ 54933800 (-) True G274996
TU312392 lncRNA upstream 120507 55239719 ~ 55244575 (-) True G275151
TU312441 lncRNA upstream 193799 55313011 ~ 55313235 (-) True G275196
TU312445 lncRNA upstream 203191 55322403 ~ 55322661 (-) True G275200
TU312446 lncRNA upstream 204199 55323411 ~ 55323622 (-) True G275201
TU312450 lncRNA upstream 209530 55328742 ~ 55328941 (-) True G275205
XM_021597393.2 mRNA downstream 52635 55047518 ~ 55050859 (-) True LOC110520226
XM_021597378.2 mRNA downstream 443813 54646623 ~ 54659681 (-) False LOC110520215
XM_036974605.1 mRNA downstream 443813 54646623 ~ 54659681 (-) True LOC110520215
XM_021597375.2 mRNA downstream 457152 54639230 ~ 54646342 (-) True LOC110520214
XR_002472959.2 mRNA downstream 467016 54633738 ~ 54636478 (-) True LOC110520218
XM_021597395.2 mRNA upstream 12182 55131394 ~ 55146386 (-) False idh1
XM_036974621.1 mRNA upstream 12745 55131957 ~ 55144962 (-) False idh1
XM_036974622.1 mRNA upstream 12745 55131957 ~ 55145408 (-) False idh1
XM_036974623.1 mRNA upstream 13390 55132602 ~ 55146388 (-) True idh1
XM_036974625.1 mRNA upstream 238155 55357367 ~ 55371667 (-) False armc8
TU311493 other downstream 420689 54679918 ~ 54682805 (-) True G274344
TU309646 other downstream 1852410 53249926 ~ 53251084 (-) True G272713
TU309282 other downstream 2394678 52708183 ~ 52708816 (-) True LOC110520182
TU307459 other downstream 3503264 51597935 ~ 51600230 (-) True il1rl1
TU307458 other downstream 3503596 51597399 ~ 51599898 (-) False il1rl1
TU312498 other upstream 290931 55410143 ~ 55411487 (-) False G275250
TU312500 other upstream 290931 55410143 ~ 55411487 (-) True G275250
TU315090 other upstream 2151570 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU315188 other upstream 2283772 57402984 ~ 57403575 (-) True G277673
TU315276 other upstream 2465174 57584386 ~ 57589183 (-) True G277749

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_05798886_05836104.mRNA True 6231 mRNA 0.48 13 CI01000009 5797882 ~ 5838430 (-)