RNA id: XM_021597444.2


Basic Information

Item Value
RNA id XM_021597444.2
length 4134
RNA type mRNA
GC content 0.45
exon number 14
gene id LOC110520263
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 56600804 ~ 56650953 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGTAGCGTATCATACAACAGCAGTGTGGAGTAGCACTGTACACGCGCAAAGACTGGTTCGTTCACACGGACTGTTTACCAAGAAAGTACTGTATCTCTTTGACAGTTTGTAAGCAACAGTGCAAAGCTGGAGGAACCAACTCAACAACCGCAACAGCAGTTGCCATGGaccgggacagagagacagcctcccCCCTGGACCGACGAACTAGCGGAGATGTCCCGGCATATCTACACCCGTCACGGGGCTAGCGACGGACTCCAGAAGGTGAACAGAGGGACTTACTCCAGACGCAGTCGGCTGAAGAGGAGTGACGGCAGCACCACCTCCACCAGCTTTATcctcagacagGGTTCAGCTGACTCCTACACTAGCCGACCATCGGACTCAGATGTCTCCCTGGAGGAGGAACCGACAGGCGGCAAGCTGGAGAAGGAGCAGCAGGCCACTGTTCAGCTGGAGAAGGCCAAGGCCAAAGCCGTGGCCTTTGCTGTGAAGACTAACGTCAGTTACTGTGGAGCCCTGGATGAGGATGTCCCTGTGGCAGGAACTGCCATCTCCTTCGATGCCAAGGACTTCCTGCACATTAAAGAGAAGTACAGTAATGACTGGTGGATTGGCCGGCTGGTGAAGGAGGGCTGTGAGATCGGATTCATCCCCAGTCCTCTGAAACTGGATAACATTCGTCTACAACAGGAGCAGAAGAGGGGCACACGCTCTTACGGTAAGTCCAGTGGGAATTCCTCCTCCAGTCTAGGAGACATGGTTTCAGGCGGGTTCAAACCCAACCCTCCCTCTGCAGGAAAACAGAAGCAGAAAGTGACTGAACACATCCCTCCCTATGACGTGGTCCCCTCTATGAGACCGGTGGTCCTGGTAGGACCGTCCCTGAAGGGATATGAGGTGACAGACATGATGCAGAAAGCACTCTTTGATTTCCTGAAGCACAGGTTTGATGGCAGGATATCCATTACAAGGGTAACGGCAGACATCGCTCTGGCCAAGAGGTCAGTGCTCAACAACCCCAGCAAGAGGGCCATCATTGAAAGATCCAACACCAGATCCAACCTAGCGGAAGTTCAGAGTGAGATTGAGAGGATATTTGAGCTGGCCCGATCCTTACAGCTGGTGGTTCTGGATGCTGACACGATCAACCATCCGGCCCAGCTCACAAAGACGTCCTTAGCACCTATCATCGTCCATGTTAAAGTGTCCTCTCCTAAGGTTCTGCAGCGGCTGATCAAGTCGAGAGGGAAATCCCAGAGCAAACACTTGAATGTGCAGCTGGTGGCAGCGGACAAACTAGCACAGTGCCCCCCGgaaatGTTTGACATCATTCTGGATGAGAATCAGCTGGAGGATGCATGTGAGCACCTGGCAGAGTACCTGGAAGCCTACTGGAGggccacacacacctccctgagcaccCCTCTCAACCCTCTGCTGGGCCGCAACCTGGgatctaccgctctctctccgtACCCCACAGCCATAACCGGGCTGGTGAACCAACAGggccaaagaAATACAAACAGGAACAGCAATCACACAGCAGCAGACCACTCACCCATCGAGAGACACAGCCTAATGCCCTCAGACGAGAACTACCACAATGAGCGGCAGAGGAAGAGCCGTAACCGCCTATCCTCCGGCTCGCAGCACAGCCGGGACCAGGTCCACTACCCCCTGGTGGAGGAGGACTATCATGACCCCTACCAGGACACGTACAAGCCCCACCGTAACCGCAATGGCTCCCCCGGAGGCTATAGCCATGACTCCAGGCACAGGCTTTGAGCTGAAGACCCTTATATCACATAGGCCTCTCTTCCCTTCACATTTGAGTATGACAGAGCCACAAGACAGCTCTTTCATTTAATTGTACTGTAACAACCTTTTTATAAAGTGTTAGTAACTCGCTTTACCTCTGGCACTGGTTCACACTGGAAACGTGAGCATTGACCAACTGAAAATCAAATCTCGACGCCTCCATTTTTTCAAAACTAAAAATAGGATGAGGAGCAGATTTTCACCATGTTTTTTTTAAGGGAAGGCCCAACACTGGGCTTGTCTTCTTCTTTTCTAACATGGCAGAGACTTGGCATGGCTGGGTGAAAGGGGTGACCATGTGGTCCTCACTCCCTGTTGTCTCAGTGTTAGCAGGGATAGCTGTCGTGGTGGTCATGATGACCCATCATCACCTGCCTTGAACCAGTGCCAGGCAGCGCCATGCATCACTCGATCAGCAGAGAACCTCTTTGCACGTTTCCAGGAGCCAATAGCAGCAGAGTCAGTGCACTGTATCTTTAATTAATATCACTAAGTTGTTTGAAATTGTCTTGGATGTTAGTGTTTCCAgtcctgtagcctataacctgctTCTCAGAGCAGACAAAGTTTCTGTTTTGCAAAATGTTGAGTGATTATTTAGGGGGTTTCTGAATTGGAATCTTCTAGTTTCCTGGACTTCTATTCCCTTCTTCTCCTCAATGATACTTAGTGCCATTTGCGACATGCCGCATCAGGACAGAAAATCACACTTTTCTAAGTAGAATTTGCTGAGCAAGTTTCATATATTGTGCTCTTTCAGGAAAGGGTGCATCCCTTCTTTATATAGTACCTTAACACACTAGTGTGAAGACTTTGCCTATCAGTTTAGTATGTGGAATCCAAGAGGAAATAGCCAAATTCAAGTTAGTAGATCTCAAGACTAGGCATCCAATGTTGAGAAGGGCAATATGCCCATGTGTGCTTAGTTTCAATTGTTCAAATGGGTTTCAGAGGATAGGCTCATTGAAGATGGTTATACTTCCAATCAGGGGAATATTGATCATCTGATTGGTTTACCACATCCCATGTTCTGTACAAGCAGCCTCTGATAGTGATTTCATTTGCATCATATTTTCTTCTCTTTTTAACAGTCTTCTTAATTCAAGTGTAATATATTCAAAGAAAGTCCTGTTTGGCCAGTAAGAAATACCTGCTGTCCATTCAGCAAAGTTTCATTGGTTTAGAATTATCAATGCCATCATGTCTTTTTGTCAATATACAGTATGCCATGGAATAATGATCCTGTTATGTATGTGTTGTTGCTATTGAAAAACCAGTAGGACACTGTAGTTGAGTAAGTGACTGTTATTTATGGTACTCACATTTCAACAATTAAATTAGTCAACACATAAGAGGAAGAGAaggcttcagtctgctgtgaagtTAATGTTATTTTGTCAGAAAGGTTTGTGATTCTGACATCAAACACTTGGTCAGTATTATTTGCTTTCCAACCATCGGCTATTCTATATTAATGCCCCATTTAAAAGTCTTCCATGTACTGGCCGTGAAAACAAAATTATGTAGTTTTTTTAAAGGACAATTTTACTATCCCAAGAATTTGCGTATCATAACACAAATTACAGCCTTATTGCTTAACCCAGGCCTTGTGTTAAACTTCTTTCTCTATTCATACTTCCGTTCTTTTTTAGCACTGTAGCAATGGAGTGGTTACTCTCCTAATCATATACATATCCTCAAACTGTAGCATTTTAGTTAGGAGTTTTTAAGGTCTATATGGTTAGCCAATTATAAAAGTTAAGTTGTGTAGAGAGTGTGAAGGGTATAGACTGGGGAGGTGGTGGCTAGAAGTTTATGTCAGATAATGTCTCTCTATATACTATGAGTTGTGTGTTGTGCACCAATTCTGGGTGTGCATCATTATTAtttcttcttcatctttgaatgcCTTCTTCTATTGCCAAGACAGCTTGATTTCTGTTTATGCTGTATTCTATAAAGGCATGCTCGTAAAGAGAAAAACAAAGAAGACAAACTAATCTagagaaaaaatataatttactATGCAAATGTGTACAGTGCTGCATGCTGATGCTTTTCCTTCCTCGGCTACTTAGCGGCTTCATTGCAGTTCAATgattatgttattgtgttattgttatttttgtgAAAGATGACATTCAAAAGGGAAATGCATAACTGCATGACTAATACAACACTTTAATTCATCAAGAAGAAAGAGAAATATGTTTTATGGAACATTGATGTATAATGAGAACCAACTCTAGCTGCATAAAAAAATTACTTATTTTGTTAAATAAATTCCGAGCTCTGTTATAAGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU314294 lncRNA downstream 115132 56484375 ~ 56485672 (-) True G276844
TU314293 lncRNA downstream 117089 56483429 ~ 56483715 (-) True G276843
TU314290 lncRNA downstream 120322 56480259 ~ 56480482 (-) True G276840
TU314283 lncRNA downstream 131093 56468912 ~ 56469711 (-) True G276835
TU314273 lncRNA downstream 139008 56453003 ~ 56461796 (-) True G276829
TU314381 lncRNA upstream 20541 56671494 ~ 56672592 (-) True G276907
TU314446 lncRNA upstream 167692 56818645 ~ 56819892 (-) True G276969
TU314475 lncRNA upstream 216257 56867210 ~ 56902275 (-) True LOC110520270
TU314588 lncRNA upstream 317083 56968036 ~ 57046855 (-) True G277110
TU314649 lncRNA upstream 403032 57053985 ~ 57054282 (-) True G277168
XM_021597447.2 mRNA downstream 231 56589557 ~ 56600573 (-) True arl5a
XM_036974733.1 mRNA downstream 22154 56495151 ~ 56578650 (-) False LOC110520260
XM_021597448.2 mRNA upstream 1416 56652369 ~ 56667591 (-) True LOC110520265
XM_036974743.1 mRNA upstream 181445 56832398 ~ 56843811 (-) False LOC110520269
XM_021597452.2 mRNA upstream 181445 56832398 ~ 56844653 (-) True LOC110520269
XM_036974745.1 mRNA upstream 216256 56867209 ~ 56917413 (-) False LOC110520270
XM_021597462.2 mRNA upstream 492482 57143435 ~ 57206958 (-) True slc49a4
TU312498 other downstream 1189317 55410143 ~ 55411487 (-) False G275250
TU312500 other downstream 1189317 55410143 ~ 55411487 (-) True G275250
TU312299 other downstream 1481592 55103494 ~ 55119212 (-) True LOC110520227
TU311493 other downstream 1917999 54679918 ~ 54682805 (-) True G274344
TU309646 other downstream 3349720 53249926 ~ 53251084 (-) True G272713
TU315090 other upstream 619829 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU315188 other upstream 752031 57402984 ~ 57403575 (-) True G277673
TU315276 other upstream 933433 57584386 ~ 57589183 (-) True G277749
TU322065 other upstream 6063622 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 8318596 64969549 ~ 64970755 (-) True G286522

Expression Profile