RNA id: XM_036974745.1


Basic Information

Item Value
RNA id XM_036974745.1
length 5616
RNA type mRNA
GC content 0.44
exon number 17
gene id LOC110520270
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 56867209 ~ 56917413 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTTCCTAAGAAGCCTTGCGGGCTTCTCAAGAATCAGTGAAAAGCCCGATTGCGCGTGCGTATCCAAACGTGGCAACGGCATCATGGCTTCTTGGAACCGCTACGGGAGTGGGATGAGAGAGCTGAAAATGTACATATTCGTCTTGTTGGTGTGCCTGGCGTCTGTGCTGCAGGCGGCGGTGAAGGTCTCTCCTCTGATAGAGAAGGTCAGCGACCACAAGGACTTAAAGAAGCTCCTGAGGACCCGATCTAATGTCCTGGTGCTCTACACTAAGTCAGCTACCTCCGGGGACTCTAAGTTCAAGCTGCTGTCTGATGTGGCCCAGGTCGTCAAAGGACAGGGCACCATCGCCTGGGTCAACTGTGGGGATTCAGAGGGTCGTAAACTGTGTAAGAAAGTGAAGGTAGATCCCAGCTCAAAAAGTGGTGGCGCAGAACTCTTGCATTATAAAGATGGGACATTCCATACAGAATACAACAGGCCTGCTACATACAAGTCCATGGTGGCGTTTTTAAAAGACCCCACAGGAGCCCCTCTTTGGGAGGAGAACCCAGAAGCCAAAGATATTGTTCATGTAGAAACTGAAAAAGACTTCAGAAAGCttctgaagagggaggagaggccgATCCTCATGATGCTCTACGCCCCATGGTGTGGTGTCTGTAAGAGGATGCAGCCCGTATTTCAACAGGCAGCTACAGAGACCAAGGGTAAATTTGTGCTGGCTGGGATGAACGTGCACCCAGCTGAGTTTGATGGCCTCAAGCAGGAGTACAATGTCAAGGGCTACCCGACCTTCTGCTACTTTGAGAAGGGGAAGTTCCGGCACCACTATGAAAACTATGGGGGCACAGCCAAGGACATCACTGACTGGATGAAGAATCCCCAGCCCCCCCAGCCGAAGGTCCCAGAGGTCCAGTGGTCGGAGACTGACTCCCCTGTCTTTCACCTGACTGACGACTCCTTCGATGGGTTCCTGGCCGAACACCCGTCTGTCCTGATCATGTTCTACGCTCCATGGTGTGGCCATTGTAAAAAGATGAAGCCAGAGTATGAGGAAGCCGCTGAATACCTCAAAGACACAAATagccctGGGGTTCTGGCAGCTGTGGACACCACCATTCACAAGGCGGTGGGAGACCGCTTCAAGATCTCCGGCTTCCCCACCGTCAAGTACTTTGAGAAGGGAGAGGAAAAGTTCACTCTACCCCACCTTAGGAGCAAGGACAAGATCATTGAATATCTACAGAACCCCCAGGCGCCCCCTCCCCCAGAGCAGTCCTGGGAAGACAAGCCATCTGGTGTCAGCCATCTTGGAATGGAGGACTTCAGGGAAGttttgaagaagaagaagcatgCCCTCGTCATGTTCTACGCACCATGGTGTCCCCACTGTAAGAACGCTGTCCCTCACTTCACCACAGCAGCAGATCTCTTTAAAGAGGACCGCAAGATAGCCTATGTTGCCGTGGACTGCACTAAAGGACAGAACCAGGAGCTGTGCAAGCAGGAGAGTGTGGAAGGCTACCCCACCTTCAACTACTACAACTATGGCAAGTTTGCAGAAAAATACAACGGAGACCGAGGGgAGGCAGGATTTATAGGTTTCATGCGCAGCCTGCGGGGGCGGGACCAGGGCAAGAGGAAAGAGGAGCTTTAAGGCAgggtgtggagagggggaggagcctGTCGTTGCACTGTGACCGTGGCAGGGGCCTCTTAGCACTGACATCACGTGATGTCGTCATGACGTGTAATCACGGGGTGGAGACTTGAGAACCTCAGAGTTTCAGGGGAGATGCTATATGAACACGCCGGGTACCTAAATTGATGACATGTTGCGCAGCTGGGAGACTCATGGATTCTGTTCAGTCAGTCGTCCTGGtgagcccttcccagctagctagttcatGCGGGAAACAGCAGCATGGCGctagtttattttttttatttttacagaaaGTGATGTGTAATTTGATGGGCAAGGGAGAAATAACTTGTAGTATTGGTCACACTCTAGATGTTACCATGACATGCCTATTAGCTAACGTAATGACAAGCCTGTGTGAATGACCAGTGCAACGATGTTGTCGGTGCTTCCCACTGAGCAGCATTTGCTTCACCGGCAGCTGTATCATATGCTGTATCAGCTAATGTAGCCAATTTGTTCCATCCCACTTGAGTAGGATAGCAGCCTACACGAGAAATAACTTGTAATATTAGTAGCAGAAACTGGAACCAAAATAATTTAGGTCTGAACAGaacaattttttttcttcattttattccactgttccgaccagcaaaagTTCTGAACCGTTTCGAACCCCAAAAAAGTAGAGGTTTAtttcgtgtttttttttttttttttaattaacatTTAGCTCAACATTAAGTTACTTCACCAATGGATAAAGCAGTATGGTGCAGGCAAGCTATGTACATGCTTTGGACAAAGTGTAGTGTAGAGTGACATGCGACTGAATTTTTGCAGGTGAGGAGAGCGCTGGGCATTTTGttacggaggagtggcttctatgaAGGATCTCTGAAAGTCTCTGAACTTTAGAGTTGGCTTAACtaacgttggaccagagctagcccttgatcatgactctcagttccattacacatAATGCCAtctagagtttgagagctagaCCAGACCTAACTGGGAAGGATTTTcagcaggcagacactggaatcaTTTCTGAGTGACAGTGAGGGCAACACCACACGAGCCACAGTGTTGACTTCGCTCCCGCTTGCTGAGCACCTCTGTCCTACAGTCAGGAGAGGGAAATAACTAGATAGCTGTCATCTTGTTCTGATATCGGTTGCACATTTATTGTGGTGATGTTCACAGAAAATTTACAATTACGGCATTATCTACATTGTTACCCcgattttaaaaaacaaagaaTTACTTTGATAAAAACAGTGATTCTGAAATTCGGGAGACAAATTTCAAATTCTCGTTGAAGTTTCTAGACGCAAGCATAAACTAGTTAGCTGGGGAGGGCTCACTAGTACgactgactggactgactgaactGAATCCATTCGTCGACACTCAACTCTCGTTGCACCACATATGTCATACATTTTGGGCACCAGGCGTGTCCATATAGCCTCTCCCAGAACACAGCTATTTTTTTAGCGATCATGTTTGTAATGCCAGTGGCCactttctttttttacattttgatgGAATGataaaaaaatcaaaaacagaacCAGAAAGAAATCAGCAGGAAAATTTTGCCCAAATACCGTGACTGCATTTGTGGAAAGCTACACCTTACTGCAGGGtatcccaaactcagtcctcagTCCaaaccgagtttgggaaacactgccttaCTGTATCTATGCAATACCAGACTCTCCCTTCCCACTCCTGAGAATCTGTGATTTGGTGGGCTAGCTGAGCTGTGGTTGTGTTGCATGTGCCACCTACAGCCAGCTACAaggatcactacactactgtCCTATCCACCTTGGTTTGTTGCCCTGAAGAGGAATACGATCTTCCAATATTACGGTTTCAATATTTTTGTACCGACCGGTCTGTCATGTTAGGTCTTGGTTTGTTTCAGGAGGACAATGATCTATTAACTGAAAACTGTGGCCTTAAATATATGTACGGAAGTTAATCACTCATCTGAGTCAGAAGGATAGTTGTGAATGATCATAGGCTCTTAAACATAGCAGAGCTCTTGTAGTGGTGCTTTGAGGCCTGGTGCTTCCATTCTGCCATGTCCCATGGTTGACTTGGCAACACAAGTAAATCAAATCTGACAGGAACGTAAAGTGCCAAATAAATCAGAATTATTGTTACTGTACATTTCATTTCCAGACAATGATTTACAGAATCCTCCTGTTGTAGTGATATGCCTAGTATTACCGCTTTATAATAGTCCTGCATTACTCTAGTGTATTCCATCAAAAACAGAGGCTTTAGAAAAGCTATGGACCAAATATGGTCGTTAATGTGCCGTCTCCTATTGAACATGACTTTTTTGCTCCATCCTTAAAATGTTTTCTGGAACAAGACACTGTCCCAGTCCATCTTTTCCTCcttttgtttggttagcagtcAGAACCATTCAACTCAATATCAGTAGGCATATGGGAATATGAATATAGTCTAGAACCATTTTTTTTATATTCttgggactgatttagacctgggacagcaGGTGGGGGCAATTCATTATCAGTTAGAACCGAACGAGCAGAAGCTGCACCTCCGTAGAATAAAATTCCATGATCCAAGATGCAGAATGCCTCTGTATGACTGTCTCTGTGCCCTGGTCTGGGAAATGTTATCCCTTATGTCCCAACACATCCAACTGGATGACTTCAGATTTCACAATAGCGCAGAGATGTGAGAAAGTCGACGGACCCCCTTAACACTCGGCACTATCATCAATACTGGAGCCATTACCATTACCTTCGTGGCAACTTTAATGCTGTGTTTTCAACTCCCCTGCTTAGGCCGCTATAAATATTTAAAGGCCTATCTGTAGCTGAACTTGTGTTTCAATATTCAGGAGTTTGGCTCCTTTCATTATTGAGTAAGGTTCTCAGGATAGCAAAAACACAATTAAAGGGAACTAGCTTGTTTGTATTGCAGTTGAATGGTTTTGAGTTCTAGAGTTGCCAAATTAAAATACCTGTTTACATTTGTCTTGTTTGAAAAGTAACATTTTTATAGATTTAAAATGGTCAGGaagtattaaataaaacatttggtgcacacacacactccctgagcTTGGCAGTATCATTGATACCGGATCATTACCATTATCTTTGGCAACATTAATGCTGTATGTTTTCAACTCATCTGCTTAAGCCGCCATAAATATTTAAAGGCCTATCTGTAGCTGAACTTGTATTATTCAGGAGTTTGGGTCCTTTCATTATTGAATAAGGTTCTCAGGGATAGTGAAAACAAAGGGAACTAGCTTGTTTGCATTGCAGTTGGAAGGTTTTGTGCTCTAGAGTCGCCACATTTAAAAGAACTGTTTACATTTGTCTTGTATGAAAAATGAAATGTATAGATTTAAAATGGTCGTTTACATTTCCTGTGCTGAATCATGGCAGgaagtattaaaaaaaaaaaaaaacatggtccATATGGGGGTTAATGAACTAATACATTGTTTGGTATTCTAAATTGGCTACTTCCAAATTAGGTCCGTTTGGAATGACTGCTGACTGACAGAACAAGATCTCCATTTAATGTTACCATTACATTTCTGCAACATGCAAAACTAACTGCATCACAGAGTGTTGGAATACTGCTTTACTGCTGTTTTTAGATGTTCTGTTATTTTTCTGTTGATCATTTTCTTTGTCTCCTTTCACTATTGTTTCTTCATCACATGGCCTCAGTTCTAGCAAATGGTTGAAGACTTTACATAAACTTTCATAAAGACAACCTTTTGTCTTATCCCAAAGCACTTCGTATTGTGTATAAACTGTCACACCTATGCCAAGAAGTCATTGTTGCAATTTGTTGATTTTCTGTGCCCAGCCATATGTACAGTTTTGCACCTTTTGAATAAGGACTTTGCAAAAAATAAAAACTCAAACATTTCCAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU314446 lncRNA downstream 47317 56818645 ~ 56819892 (-) True G276969
TU314381 lncRNA downstream 194617 56671494 ~ 56672592 (-) True G276907
TU314294 lncRNA downstream 381537 56484375 ~ 56485672 (-) True G276844
TU314293 lncRNA downstream 383494 56483429 ~ 56483715 (-) True G276843
TU314290 lncRNA downstream 386727 56480259 ~ 56480482 (-) True G276840
TU314588 lncRNA upstream 50623 56968036 ~ 57046855 (-) True G277110
TU314649 lncRNA upstream 136572 57053985 ~ 57054282 (-) True G277168
TU314730 lncRNA upstream 271251 57188664 ~ 57189944 (-) True G277245
TU314744 lncRNA upstream 291520 57208933 ~ 57209198 (-) True G277259
TU315082 lncRNA upstream 303174 57220587 ~ 57222617 (-) True G277576
XM_021597452.2 mRNA downstream 22556 56832398 ~ 56844653 (-) True LOC110520269
XM_036974743.1 mRNA downstream 23398 56832398 ~ 56843811 (-) False LOC110520269
XM_021597448.2 mRNA downstream 199618 56652369 ~ 56667591 (-) True LOC110520265
XM_021597444.2 mRNA downstream 216256 56600804 ~ 56650953 (-) False LOC110520263
XM_021597446.2 mRNA downstream 216256 56600804 ~ 56650953 (-) True LOC110520263
XM_021597462.2 mRNA upstream 226022 57143435 ~ 57206958 (-) True slc49a4
XM_021597463.2 mRNA upstream 315220 57232633 ~ 57260239 (-) True LOC110520276
XM_021597464.2 mRNA upstream 355060 57272473 ~ 57291527 (-) False si:dkey-91i10.3
XM_021597465.2 mRNA upstream 403825 57321238 ~ 57330396 (-) True LOC110520278
XR_005050883.1 mRNA upstream 415205 57332618 ~ 57336298 (-) False LOC118963713
TU312498 other downstream 1455722 55410143 ~ 55411487 (-) False G275250
TU312500 other downstream 1455722 55410143 ~ 55411487 (-) True G275250
TU312299 other downstream 1747997 55103494 ~ 55119212 (-) True LOC110520227
TU311493 other downstream 2184404 54679918 ~ 54682805 (-) True G274344
TU309646 other downstream 3616125 53249926 ~ 53251084 (-) True G272713
TU315090 other upstream 353369 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU315188 other upstream 485571 57402984 ~ 57403575 (-) True G277673
TU315276 other upstream 666973 57584386 ~ 57589183 (-) True G277749
TU322065 other upstream 5797162 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 8052136 64969549 ~ 64970755 (-) True G286522

Expression Profile