RNA id: XM_021597464.2


Basic Information

Item Value
RNA id XM_021597464.2
length 2022
RNA type mRNA
GC content 0.50
exon number 9
gene id si:dkey-91i10.3
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 57270782 ~ 57297762 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACTAGGACAATAGTGGCAGTTGGATGGCTGGCTGCGCTCTCAGTATATATAAAAACAAGTGGCCATTATAATAGGCATATCATAGGCAGGAGAGAGCTCAGTCGTACGGATAAGAATAACAGGCTACACTTTCCAGCAGTCGGAAGGACAATTTATGCGTCAACATGTTTAGCAGATCTTTATTACAGATCGGACTGCGTGTTTGTACACAGGAGAATAGGAACGGGATTAAAAGAGTGACACCGACGTTAACCTACATTAGTGACAGGCGGCGCGATGCCTCTACCACTATCGTGGGGGACAACAATAAACAGAAAACTATGGATGATTTGGATGGGCCTAGTTTTCTGAGATCTTTATATTGGCTTTTCGGGAAAGGGTATTTTCAAACAACACATCAAATGCAAaTTGAACACAGCAAGATCTATGGCCCTCTGTGGAAGTCAAAGTACGGGCCCTTGGTGATAGTGAATGTGGCCAGTGCTGAGCTGATTGAGCAGGTGTTGAGACAGGAGGGCCGCCATCCCACCCGCATGGACATGCCCCACTGGAGGAGTTACCGCGAGCTGAGGAACCACGCCTATGGGCCCCTCACAGAGATGGGTGCTCAGTGGCAGCGGATCAGGAGTATCCTGAACCCGCGGATGCTGAAGCCTAAGCATGTCTCAGCCTACACCAACGCCATCAATGACGTGGTCACAGACTTCATAGAAAAGGTGGCATGGCTCAGGGAGACCAAGGGAGAAGGGGTCATGGTGAACGATCTGGCTGGAGAACTCTACAAGTTCGCCTTTGAAGGGATCTGTTCTGTGCTGTTTGAGACCCGTATGGGCTGTCTGAATGAGGAGGTTCCTGAAGAGACCCAGAAGTTCATTTTTTCAGTAGGAGAGATGTTTCGCCTCTCCCCCATCATCGTTCTCTTCCCCAAGTCCACCTGGCCCTACCTCCCCGTCTGGAAACATTTTGTGGCTGTCTGGGATCACCTCTTCAAAGTTGCGGAGGAGCAGGTGCGTCAGAAGATGGAGGAGATCCAGGAGAGGATCTCCCTGGGCCAGCCAGTGCAGGGAGAGTACCTCACACACCTCCTTGTCAGCGAACAGATGTCTGTCACTGAGATACTGGGCTCCATCACTGAGCTACTGCTGGCTGGGGTCGACACAACGTCCAACACCGTCTCGTGGTCTCTGTACCACATGGCCCTGGAGCCAGAGATCCAGGAGAAGCTGTACCAGGAAGTGATCAGTGTCTGCCCGGGGGACAAGGTGCCAACTAGTGATGACATCGCCAGAATGCCCTGGCTTAAGACTGTTGTCAGGGAGACACTACGGATGTACCCAGTAGTACCCGGGAATGCCCGCATCAATGTGGAAAATGAAATAGTCGTGGGGGACCACCTCTTCCCCAAAAATACCCTGTTCCACCTGTGTCACTATGCCGTGTCCTATGACCAGACAGTGTTCCCGGAGCCCCATGCCTTCCTGCCACAGCGCTGGCTCCGTGGCGGCCGGGGGGAAGACAAGAAGAACCAGCACCCCTTCGGCTCCGTGCCCTTCGGTTTCGGGGTCCGGGCCTGCCTGGGCCGGAGGGTGGCCGAGCTGGAGATGTACCTCATCCTTTCAAGGtTGATAAAACACTATGAGATACGTGCAGATCCTGCTGGAGCCACAGTTAAGCCAATCACAAGAACCCTTCTTGTCCCTGCTACCCCAATCAACCTGCAGTTTATTAATAGGACAGTCCAGTAGCAAGAGGAACCAATGGCAGCAGAAGGAATTTCCCTATGAACCACATTAGTATCAAAGGTGgtatattatattgacaagataaaCAAGTGACCGCTGTGACAATGGAAATATATATCCTGAAAGATAGAGGAAGCCAGATCAGGTGAggccattctagccaatgaaagGGCAGATgtgtgtgaacaacaggccaaagatatagatagaggactcatctttgtatctgtgctattatatatttatttttgttatttgattatttaaaaaaaacattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU315112 lncRNA downstream 5277 57266936 ~ 57267196 (-) True G277604
TU315082 lncRNA downstream 49856 57220587 ~ 57222617 (-) True G277576
TU314744 lncRNA downstream 63275 57208933 ~ 57209198 (-) True G277259
TU314730 lncRNA downstream 82529 57188664 ~ 57189944 (-) True G277245
TU314649 lncRNA downstream 218191 57053985 ~ 57054282 (-) True G277168
TU315093 lncRNA upstream 41041 57332568 ~ 57335897 (-) True LOC118963713
TU315156 lncRNA upstream 58045 57349572 ~ 57349815 (-) True G277647
TU315157 lncRNA upstream 58868 57350395 ~ 57350781 (-) True G277648
TU315158 lncRNA upstream 59854 57351381 ~ 57351609 (-) True G277649
TU315162 lncRNA upstream 67621 57359148 ~ 57359527 (-) True G277653
XM_021597463.2 mRNA downstream 12234 57232633 ~ 57260239 (-) True LOC110520276
XM_021597462.2 mRNA downstream 65515 57143435 ~ 57206958 (-) True slc49a4
XM_036974745.1 mRNA downstream 355060 56867209 ~ 56917413 (-) False LOC110520270
XM_021597452.2 mRNA downstream 427820 56832398 ~ 56844653 (-) True LOC110520269
XM_036974743.1 mRNA downstream 428662 56832398 ~ 56843811 (-) False LOC110520269
XM_021597465.2 mRNA upstream 29711 57321238 ~ 57330396 (-) True LOC110520278
XR_005050883.1 mRNA upstream 41091 57332618 ~ 57336298 (-) False LOC118963713
XM_036964539.1 mRNA upstream 118454 57409981 ~ 57414314 (-) True LOC110505369
XM_036974749.1 mRNA upstream 124555 57416082 ~ 57426715 (-) False LOC110520281
XM_036974747.1 mRNA upstream 124555 57416082 ~ 57427276 (-) False LOC110520281
TU312498 other downstream 1860986 55410143 ~ 55411487 (-) False G275250
TU312500 other downstream 1860986 55410143 ~ 55411487 (-) True G275250
TU312299 other downstream 2153261 55103494 ~ 55119212 (-) True LOC110520227
TU311493 other downstream 2589668 54679918 ~ 54682805 (-) True G274344
TU309646 other downstream 4021389 53249926 ~ 53251084 (-) True G272713
TU315188 other upstream 111457 57402984 ~ 57403575 (-) True G277673
TU315276 other upstream 292859 57584386 ~ 57589183 (-) True G277749
TU322065 other upstream 5423048 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 7678022 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 7722732 65014259 ~ 65029736 (-) True G286580

Expression Profile