RNA id: XM_021597476.2


Basic Information

Item Value
RNA id XM_021597476.2
length 4067
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110520286
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 57909607 ~ 57919306 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGCAAAGGAGAACATTGTAAAGATAACAGCATCTATTTCAGGACACAGAGCCGTCGCATACACACACCCATAGGATAGTCTACTCAAACTCACCAGTAGACAAACAAGACAGTGATCTAGGGATTAGTTGGGTGTGAATTCGATTGCAATTTAGTTGGATTCCTAAAATTGCGTTTATAGGAGTGCTTTGAATGTAAAGGTAACGTCATATTTGGAACTTCACATCAAACGTTTCGTCTCCTGATCAACGGATACAAAGCCCACGTACCGGTGAGATACTAAATGTGGTTTGCAAAGGTTATGGAATATAATAATTCGTTTTGTTAAATTTAAAGAAATGGCATGCCAGACGTGGTAATGCCATTCAGATAGCCTACTACACACGGTGCTCATTTCAGATTCGCCGGTCAAGAAATCCGGTTAAGAACCAACACCTCTGGAATTGTGCTTTAGATGAGAACTGAACTGTAGTGCGCTTCACAAAAAGGACCCAAGCTTTACAGGGCTCGAGAGGAAGCAAATACGAACATCTGGAATAATCTATTAGCTCTTGACAGCAACCTCTTTGGAATACAAAAACCGCATGGACTATTTTGGATTACCCTAACGTGTGCATCAATCATAATTCCATGTGCAAACTATTCCCGCTGGCGCAGAGCTGGATATTTACCAGGATGCTAAACTTGTGAAGTAGCCTAACTCTCTTTCTTTGCTCTCTGTATCGAATAACCAATATTCTTCCTCTCCATCGTGCTTGGGAATTCCAGTCTCAAAAAGGGAAAATGAAAAGATATAATCTCACGTTGGCTTGTTTAATGGCTTGCATCCTTTCCATCTGCTTTACTTTGGGCACAACTGGGGCAGAGACTCAAACCGTGACCCAGGAGTCGTGCGCTTCGTGCGGGATGCCGGAGGCGTCAGAACGGGTGGATATAGACTTATTGGAAGCAGTTAAGAGGCACATCTTGAACAGGTTACAAATGAGAGAAAGACCCAACATCACACATCCTATCCCGAAAGCGGCAATGGTGACAGCGCTGAGGCGGCTACACGCAGGTAAACTACGAGAAGACGGAAGGGTTGAGATCCCTAACCTTGATGGACAGGCTGCCTACAGTAACGAGGGGCAAGAGACTTCGGAGATAATCAGCTTCGCCGAATCAGATGAGCTGACTTCATCTCAAGCATCTAAGTCCAGCCTCTACTTCCTCATCTCCAGTGAAGGGAACCAGAACCTGTACGTGTCTCAGGCCAACCTGTGGCTCTACTTCAGGCTGCAGCCCACCGGCTCCGAGAAAGGGCCTCGACGAAAAGTCACAGTGAAGATCCACTACAaggaggcagggactgggactgCAGGTGGAGCCGGGGAGGGAACAGGGCCAGGGGGAGGAGGTCGGTGGACCCTGGTGGAGAAGCGCGTGGACCTTAAGCGCAGTGGCTGGCACACATTCCCCATGTCAGAGGCCGTGAGGGCCGTGTTTGGTAAGGGTGGCCGGCGGCAGGACCTTGAGGTGCACTGCGATGGCTGTGAGGCGTCCAACGTGGTTCCTATCTTAGTCGACACAGCAGACCCTTCACACAGGCCCTTCCTGGTGGTCCGGGCGCGGCAGGTGGAAGGGAAGCACCGCATCAGGAAGAGGGGCCTGGAGTGTGACGGGAGCAGTGGAGGTCTGTGCTGCAGACAGCAGTTCTACATTGACTTCCGCCTCATTGGCTGGAACGACTGGATCATCGCACCTGCGGGTTACTACGGTAACTACTGCGAGGGGAGCTGCCCGGCATACATGGCGGGGGTACCGGGGTCAGCGTCGTCGTTCCACACGGCAGTGGTCAACCAGTACCGGATGAGGGGCATGAGCCCCGGCTCGGTCAACTCCTGTTGTATCCCCACCAAGCTCAGCACCATGTCTATGCTGTACTTCGACGATGAGTACAACATAGTAAAACGAGATGTGCCCAATATGATAGTGGAAGAGTGTGGCTGTGCCTGAGACTGTCTGtgatttttttaaaactttgaaCTTTGACTATAGTTAAAAAGTCTTGTACAAAAGGACCTTTTTGTACTATACACATATACCATataactaaatatatatatatttatatatttagttATATGGTACAAGCAAACATGTACTAATGGATTATTTATCTGGCTGAGCGAGGCCAGTTTCTGTCCATTTCATATTAAGAACAGAGTTATGGGAGGAGAAGGGAATGGTTGATCACCAAATTATATTATTTTTCTAGTTTGCCATTTTTAGATGAAAAATAATGGTACTTTATCTCTTCTCTGATGAAGATGGAAAGAAAAGCGCTTATtgacccagtgcagtcaaaaacgtgttttatatatatttccacactatgtggttggaataatactgtgaaagtgtgaaaattatgataatgcccttttagagtcttttgaaaagaccgcctgaaatttcagcctgttttggtgggatggagttttggccagCCTAGTGACATCAACAGGtgttaaattagttaatagaccaataagaaagagttccaaacctctctgacaATAACAGGTCGTTTTCAGTTTCCCCTTACCACtctgaccactcccagacagtcgtAGCAACATTTTtctttgagaaattgctcttcgctaagaagttatttttgtttatttttgaccattttaattaaaacaatcacagtaaagtACTTAATTGTTATCCAGAtaatatttgatattgagataaaaaggGCTGGATTGGACCTTTAAGGAAGCTTACAGGTCCAGGATCAGTCAACCGCACATTGgcttcttccccccccccctgagtACTGAAGCACACCAGAACATTGACAAAACAAAAGCACTGACAATGACAATTTATCGGATAATACAATTAGAAACACCAGCACTTCCATAAAGACTGTCAAAGACACTATGACTGTCCCATTCGATCCGGTGGAATTATTACAGAAAGTGTATCAGCCTGCGCTTATTATTGAATAAAGCCTTTCTGGGACTACACTCCTGTCCAGGTGAGGTGATGACACAACAACAACGTTGTTGACATGTTGTTGTTGACATTGGACCACACGTTCTCTCTTCCAGTCTGTGACCGTACTGCAGGCGAGCACTCAGTTCGAAGGTGGAGATGGTACTTTGTGTACAGTGCACAACTCTACACACACTTCATCCAGAGAAAACAGAGTCCGCACTGCCCCTACTTGTTTCGATAAAGTGGACCTCGAAGTGGACGAGGAGGAGACTCTTGTTATGGGCCAACAGGGCATGATGGTGCAGTGTAGCACTTGCAGACTAAACTCTTTAAATGCACACTCCCACTCCTAATAGCACTTGCATATTGAAATGCCTTCAAAGGGGTACTGAGTGTCCTGTCATAAATAAGTGCCACGTAATTTATGCAATGTATAGTAACCCACCCATGCCCACCTACACAACTCTACCAGACTGAAATtatctttcttctcctcttctcctagtCTTTAACTCCTCTTATCAAATACTTGAAATGTGATCTTTCGCTTCCATTTTTCCAAAGCGAATGATTGTTATGACATTTGCACTGAAAAGTTGCGGGATTAGTTAATAAACAAACTGCCATTGAAAGTTATTTTTCTAGaagtaaattgtattttttttgtacaaaTTTTATTTGACCTATTAATGGAACCAAAGAGGCCAATATTATTTGAGCTTATTATTATAATAAGATGGCGAGGCCATCACGTTACTTTCTGTGTACAATGCTGTTTGATCATAAGAGGCCTAATCTACGTATCAGGGTACAATATGATGATTCTATTTCTTAGTTATATTATTTCCTTTCTCTATCTATTTTGTACAATACACATGTGGACACTTCATTTTTCATCTTtaattctatttttttttctcccgtttttctatttaataaaaatatatttttagttcCTGTTTCAGAATCATTTAGTCATATCAATGTCATCTGTACAGTTTATGTAAAGTAAAATATGTTTTCTTAAAATATTTTGTAACTTTAAAATAAATGCTTATTCTGCATCATTATCCTA

Function

GO: NA

KEGG:

id description
K22687 INHBB; inhibin beta B chain

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU315510 lncRNA downstream 119462 57789815 ~ 57790145 (-) True G277974
TU315504 lncRNA downstream 123946 57785432 ~ 57785661 (-) True G277968
TU315502 lncRNA downstream 124783 57784548 ~ 57784824 (-) True G277966
TU315332 lncRNA downstream 267818 57638397 ~ 57641789 (-) True LOC110520285
TU315274 lncRNA downstream 302587 57595333 ~ 57607020 (-) True LOC110520284
TU315765 lncRNA upstream 15959 57935265 ~ 57988629 (-) True G278220
TU316365 lncRNA upstream 407166 58326472 ~ 58327641 (-) True G278797
TU316492 lncRNA upstream 558899 58478205 ~ 58478560 (-) True G278917
TU316516 lncRNA upstream 576186 58495492 ~ 58495703 (-) True G278941
TU316521 lncRNA upstream 577953 58497259 ~ 58497557 (-) True G278946
XM_021597475.2 mRNA downstream 174690 57632140 ~ 57734917 (-) False LOC110520285
XM_036974790.1 mRNA downstream 300581 57598546 ~ 57609026 (-) False LOC110520284
XR_005051425.1 mRNA downstream 427887 57481596 ~ 57481720 (-) True LOC118964377
XM_036974746.1 mRNA downstream 482263 57416082 ~ 57427344 (-) True LOC110520281
XM_036974747.1 mRNA downstream 482331 57416082 ~ 57427276 (-) False LOC110520281
XM_021597478.2 mRNA upstream 14764 57934070 ~ 57943312 (-) False si:dkey-3d4.3
XM_021597477.2 mRNA upstream 14765 57934071 ~ 57943306 (-) True si:dkey-3d4.3
LOC118964362 mRNA upstream 583251 58502557 ~ 58502699 (-) True LOC118964362
XM_036974792.1 mRNA upstream 824595 58743901 ~ 58761334 (-) False LOC110520288
XM_036974791.1 mRNA upstream 824595 58743901 ~ 58761841 (-) True LOC110520288
TU315276 other downstream 320424 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 506032 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 611845 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312498 other downstream 2498120 55410143 ~ 55411487 (-) False G275250
TU322065 other upstream 4795269 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 7050243 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 7094953 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 7135394 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 7135394 65054700 ~ 65075985 (-) True G286638

Expression Profile