RNA id: NM_001124709.1


Basic Information

Item Value
RNA id NM_001124709.1
length 4597
RNA type mRNA
GC content 0.55
exon number 38
gene id cps1
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 60165978 ~ 60253769 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACATCAGAATAAGTGAATTAAAGACGGAATATGACAAAAATATTGACAGCCTGCAACGTCGTCAAATCACTGAGGCAAGGATGGCTCGCAGCCAGAAGAAGCAGCAACCCTGCTTGTTTGAGGTCTGCTAGGCTCTTCAGTGTTAAGGCCCAGATAGCCCACCTGGTCCTGGAGGATGGTACCCGGATGAAGGGCTTCTCCTTTGGGGATGAACGATCTGCTGCTGGGGAGCTGGTCTTCAACACTGGCCTGGTGGGGTACCCAGAGGCTTTGACTGACCCCAGCTACAGAGGTCAAATCCTGACCCTGACCTACCCCATAGTGGGGAACTACGGCGTTCCAAACACTCAGGAGCTGGATGAGTTGGGCCTGAGGAGGAACATTGAGTCAGACCGTATACAGGTATCTGGACTCTTGGTGCAGGATTACAGTCATGAGTACAGTCACTGGAACTCTGTCAAGTCCCTGGGACAGTGGCTACAGGAGGAGAAGGTCCCTGCATTGTTTGGAGTGGATACTAGGATGCTGACCAAGATCATCAGAGACAAGGGTACAGTGTTGGGGAAGATAGAGTTTGAGGGCCATCCAATAGAGATATCAGACCCCAACCAGCAGAACATTTTAGCAGAAGTCTCAACAAAGGAGACCAGAGTGTTTGGGAAAGGTAACCCCATCAAAGTGGTGGCTGTTGACTGTGGCATCAAGCACAacatcatcaggctgcttgttaAGCGTGGTGCTGAGGTCCATCTGGTGCCCTGGAACCAGGACCTGATGAGTCTGGAGTACGATGGCCTGTTCATCTCCAACGGCCCTGGGGATCCCTCTCTGGCAGGAGACCTCATACAGAACGTCCGCAAGGTTCTGGAGAGTGACCGGCCACAGCCTGTCTTTGGTATCTGTATGGGCAACCAGATCACAGCACTGGCTGCAGGGGCCCAGTCCTACAAACTGCCCATGGGTAACAGAGGTCAGAACCAGCCTGTACTCAACGTGATGACGGGTCAGGCCTTCATCACAGCCCAGAACCATGGTTATGGCATTGACAGCACCTCTCTACCACCTGGATGGAGCCCGCTGTTTGTTAACGCCAACGACGGAACCAACGAAGGTATCATGCACGACACCAAGCCAGTCTTCACGGCTCAGTTCCACCCAGAAGCTAAAGGAGGACCTACAGACACTGAGTTCCTATTTGATGTGTTCATATCCCTGATAAAGAATGGGAAGGAGGCCAACATTGTGTCAGTCATGCCCAAGAAGCCTGCTATCCCACCTAGGACTCAGGTTTCCAAGGTGCTGGtgctggggtctggaggtctgtccATTGGTCAGGCTGGGGAGTTTGACTACTCTGGATCACAGGCCGTCAAAGCCATGAAGGAGGAGAACGTGAGGACGGTGCTGATGAATCCGAACATAGCATCGGTGCAGACCAACGAGGTGGGGACTAAACAGGCTGACTCTGTCTACTTCCTGCCTGTCACGCCTCAGTTCGTCACAGAGGTCATTAAGACCGAACGACCTGACGGAATCCTTCTGTCTATGGGAGGACAGACCGCTCTAAACTGTGgagTGGAGCTGTTCCAGAGTGGAGTACTGCAGAAGTATGGGGTGAAGGTGTTGGGGACCCCTGTAGAGTCCATAATGGCTACTGAAGACAGACAGCTGTTTGCTGACAAGCTCAACGAGATCAATGAGAAGATTGCTCCCAGCTTCGCTGTGGAGACGGTGGCAGGTGCCCTGAAGGCAGCGGATCAGATAGGCTACCCGGTCATGCTACGTTCTGCCTATTCCCTGGGCGGACTGGGCTCAGGATTCTGTGCCAACAAGGACAAGCTGGAGGAGACCGCTCGGAAGGCCCTGGCGATGAGCTGTCAGATCCTTGTGGAGAAGTCTCTGATGGGTTGGAAAGAGGTGGAGTATGAAGTAGTCAGGGACATCGCTAATAACTGTGTCACTGTCTGCAACATGGAGAACTTTGACCCCCTCGGCATTCACACAGgTGACTCTATTGTGGTGGCCCCCAGCCAGACTCTGTCCAATGAGGAGTACCACATGCTGCGTGAGACGGCCATCAAGGTAGTGCGTCACCTGGGCATCGTGGGGGAGTGTAACATCCAGTACGCCCTTCACCCTGGCTCTCTAGAGTACTGCATCATAGAGGTCAACGCTCGCCTCTCACGCAGCTCTGCCCTCGCATCCAAGGCCACCGGGTACCCCCTGGCGTTTGTTGCAGCCAAGCTGGCTTTGGGCATCCCTCTGCCGGAGATCAAGAACACGGTGTCAGAGAAAACCACAGCCTGTTTCGAACCAAGCCTGGATTACATTGTCACTAAGATCCCTCGCTGGGACCTTGACCGATTCCAGGGCATGTCCCGAGAAATAGGCAGCTCCATGAAGAGTGTTGGAGAGGTGATGGCGGTTGGGCGTACGTTTGAGGAGAGCATGCAGAAGGCTCTGAGAATGTGCCACCCCTCTGTGGACGGGTTCATGCCCCGCCTGCCCCTCAACAAGCCTTGGCCTGCTCAGCAGGACCTACACCAGGAGCTGGCTGTACCCTCCAGCACACGGGTTTTCTCCCTGGCCAAGGCCCTTCACAGTGGTGTGACTGTAGACCACATCCACCATCTCACTGCCATAGACAAGTGGTTCCTACACAAGCTACGACGCATCACAGAGTTGGAGCAGCACCTGAGCCAGTTCAACAGTGCAACATTAccccagaccctgctgctgaaGGCTAAACAGGATGGCTTCTCAGACCGCCAGGTGGGCCAGGCCCTTGGCTCCAGTGAGGGGGAGGCCAGAGTGTTGAGGCTGGGTCAGAACATTAAACCCTGGGTGAAACAGATTGACACCCTTGCTGCAGAGTACCCTGCTGTGACCAACTACCTGTACTGTACCTACCATGGACAGGAGCATGACTTGGAGTTCAAGGACCAGGGTGTCATGGTGCTGGGATGTGGTCCCTATCACATTGGGAGCAGTGTGGAGTTTGACTGGTGTGCAGTGTCCAGTATCCGAGCCCTGCGTCAGATGGGCATGCGGACAGTGGTGGTAAACCACAACCCTGAGACTGTCAGCACGGACTTTGACGAATGTGACCGCCTGTACTTTGAAGAGTTGACTCTGGAACGCATTCTGGACATCACACAGCAAGAGGGCTGTACAGGCAGCATCGTGTCTGTAGGGGGTCAGATCCCCAATAACCTGGCCATGCCTCTGCACCTGAACGGGGTCAAGATCCTAGGAACCAACCCCCAGCAGATTGACCGAGCCGAGGAGAGGTCAGTGTTCTCCACCATCCTGGATGAACTGGGGGTGGCCCAGGCCCCGTGGAAGGCCCTCAGCTCACTGGAAGATGCCTTTGCCTTTGCCAATAAAGTGGGCTACCCCTGTCTCCTGCGCCCCTCTTACGTACTCAGtGGCTCAGCAATGAACGTGGCATACGGTGAAGAAGAGATGAGGGGCTTCTTGGACGAGGCTACTCAGGTGTCTCAGGAGCATCCAGTGGTCATCACCAAGTTCATCCGTGGAGccagagaggtggaggtggatgcAGTGGCCAAGATGGGAAAAGTGCTGTGCCATGCTATAACAGAGCATGTGGAGGATGCTGGGGTCCACTCTGGAGATGCCACCCTCATGCTACCTACCCAGAGCATCAGCCAGGGGGCCCTAgagaagGTGAAGAGTGCCACACGGAAAATTGCTAAGGCGTTTGAGATCTCTGGTCCATTCAATACTCAGTTCCTAGTGAAAGGCAACGATGTcatgGTGATAGAGTGTAACCTGCGAGCATCACGCTCCTTCCCCTTCGTATCTAAGACCATCGGTGTGGACTTCATTAGTGTGGCTACACGGGTCATGGTGGGTGAACCCCAGGATGAGGCTGCTCTGCCCTCTCTGGAGAACCCCATCATCCCCGTTGACTATGTGGGAATCAAGGCTCCTATGTTCTCCTGGCCTCGCCTTCGTGATGCCGACCCAGTCCTGCGCTGTGAAATGGCTTCCacaggagagGTGGCTTGTTTTGGACCAAACATCTACTCTGCCTTCCTCAAGGCTATGCTATCCACTGGCTTCAAGCTGCCTACAAAAGGAATCCTCATCGGGatccagCATTCGTTCCGGCCCAACTTCTTAGCCACAGCACACCAGCTGAATGAAGAAGGCTTTAAGctctttgCTACAGAGGCCACCTCGGCCTGGCTCTCTGCCAATGACGTGCCCGCCACCCCTGTGGCATGGCCCAGCCAGGAGGGAGGAGACGCCAGCTTGCCCAGTATTATCAGgctGATCAATGAGGGCCACATTGACCTGGTGATAAACCTTCCTAACAACAACAGCAAGTTCCTCAGGGACAATTTCCTGATCCGCAGGATGGCTGTGGACCACGGGGTGCCTCTCATCACCAACCACCAGGTGGTCAAGCTGTTTGCTGAGGCCATAAAGTATGCCAGCGAGTTGGACACCACCAGCCTGTTCCACTACCGCCAACGGGACGCTGACCGCCAACGGGACGCTGACCTCGAAAAGGAAGCTGACCGCCTTAGGGACACTGCCACCAGACTGCCGAGCTAGagctgtacc

Function

GO: NA

KEGG:

id description
K01948 CPS1; carbamoyl-phosphate synthase (ammonia)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318939 lncRNA downstream 73 60164508 ~ 60165905 (-) True G281221
TU318968 lncRNA downstream 2443 60163330 ~ 60163535 (-) True G281250
TU318960 lncRNA downstream 9585 60156052 ~ 60156393 (-) True G281242
TU318945 lncRNA downstream 41670 60124105 ~ 60124308 (-) True G281227
TU318695 lncRNA downstream 58333 60107183 ~ 60107645 (-) True G281005
TU319017 lncRNA upstream 4907 60258676 ~ 60259024 (-) True G281299
TU319059 lncRNA upstream 23556 60277325 ~ 60298773 (-) True G281320
TU319024 lncRNA upstream 33619 60287388 ~ 60290510 (-) False G281303
TU319025 lncRNA upstream 33619 60287388 ~ 60303967 (-) False G281303
TU319026 lncRNA upstream 33619 60287388 ~ 60290510 (-) False G281303
XM_021597493.2 mRNA downstream 1021142 59115416 ~ 59144836 (-) True vwc2l
XM_021597494.2 mRNA downstream 1021145 59115416 ~ 59144833 (-) False vwc2l
XM_021597482.2 mRNA downstream 1233724 58775631 ~ 58932254 (-) True LOC110520290
XM_021597483.2 mRNA downstream 1233725 58775631 ~ 58932253 (-) False LOC110520290
XM_021597484.2 mRNA downstream 1233726 58775631 ~ 58932252 (-) False LOC110520290
XM_036974806.1 mRNA upstream 38634 60292403 ~ 60342883 (-) False map2
XM_036974807.1 mRNA upstream 38634 60292403 ~ 60342883 (-) False map2
XM_021597504.2 mRNA upstream 38634 60292403 ~ 60416303 (-) False map2
XM_036974797.1 mRNA upstream 38634 60292403 ~ 60416303 (-) False map2
XM_036974798.1 mRNA upstream 38634 60292403 ~ 60416303 (-) False map2
TU315276 other downstream 2576795 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 2762403 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 2868216 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312498 other downstream 4754491 55410143 ~ 55411487 (-) False G275250
TU322065 other upstream 2460806 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 4715780 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 4760490 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 4800931 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 4800931 65054700 ~ 65075985 (-) True G286638

Expression Profile