RNA id: XM_036965063.1


Basic Information

Item Value
RNA id XM_036965063.1
length 1728
RNA type mRNA
GC content 0.49
exon number 19
gene id LOC118944694
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 64884338 ~ 64895983 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cTCAATACTCACTTTATCGACTCCCAAAACACTCGACAGTGGCCGTGTTGCAGTCGGCATCTAAGTGAGGTTAGCTTACTTTTTGTATAAAAATTACAGCTACATCTTGAACGCACAATTTTTCAAGAATTAAGACCAAAGTCATATGCTTTCGTCACACCACAGTCCAACATGGCGGCCACGTCTGTTTTCCACAGAGCGAGAACAGGTTCGAAAATAGGAGCTCAATATGATCAAGAGGGAAATCTTATTCAGGCTGAAACAAGGGAGGACGAGGAGCAGAGTGTCAAGCTAGCAGAAATCCTGGAACTTCTTCTTGCTGCTGGATATTTCAGAGCCCGAATAAAAGGACTGGGACCTTTTGACAAGGAGAATTCAACTATTGGACAGAAAATCGCTCTCACAGAGAAGATTGTGTCTGTTCTGCCCAAAATGAAGTGCCCTTATTGCCAGGAGCCTCATCAGATCCAAGGGCTGGATTTCATCCATATATTTCCAGTGATACAGTGGCTGATGAAGAGGGCCATAGAGAcgagggaggagatgggagactaTGTGAGAGCCTATTCTGTCTCTCAGTTCCAGAAGACACACAGCTTCCCTGAGGATGAAGACTTCCTCCAGAGGAAGGAAAATGCTGTGAAAGATGTATTGGAAGTGTATAAACCTCATAGGAAATACAAGAGACAGGTTGAAGCAGGATCCCTGTTGGACGAGGAGTACAGGGTTCACTCCACTCTATTGGAGTACGGAAGACAGTATGGATTCAGCAAGCAGACAAAACAGGACCAGGCAGAGGACCGGAAAGCCTTGTTGATGCCAGGCTCTCAGGCCACACCCCCAGGGATTACAGAGGGGtcgcaggaggaggaggagtacctGCAGGCAGCGGAGCTGCGCATCAAAACACTGATGCCCAGCATGGCTGCCATGGGGAGGCTAACGGCTAGCACAGTGGGACAGATAGTTGGGCTGCAGTCTGAGGAGATGAAACAGATAGCATCTGAGTATGCTGAGAAGTTGGAGAGGTCTGCAGAGGACCGTCCAGAGTGGTACGGGCCAATCCAGCAGCACCGTAGGATAGTGACCTCTCTGAACAAACAGATCCAACAGAAGACCAAGCAGTTGGAGGAGCTACAAGCCAAACACTTGGGTGTAAAATCAGGGTGTGTGGAAGCTAAGAGCAAACTGTTGGAGGCCACAGAGCAGACCGAGAGACTGGAGAAAGAGCTGAGTGCCCTTGAAGAGGCTGAGGGCCAGGCTGATACTGGACTGTTGGAGAAGCTGAGGGCTCTGGTAGGCATGAATGAGAACCCGAAGCACCAAGAGCAGGAGTTCCAGACACATTGTAGAATGGTTCGCCTGCAGCAGAACATTGAGGACCTGAAGATGGAGTCAGGAGATGATACAGAGGATGAGAAGGAGAGGAGTCAGCTAATCGACAAGCAGtacaacacagacagagataagcTACAGAAGATCAGACTGATGATGGCTTGGAGGAACCGTGAGATCGCCATCCTGCAGAGGAAGATAGACGAGGTGCCGAGCAGGGCAGAACTGAACCAGTATCAGAAGAGGTTCATTGAGCTCTATGGCCAAGTTTCAGCAACACATAAGGAGACCAAGCAGTTCTTCACCTTGTATTACACATTAGATGACAAGAAGGTGTACCTGGAGAAGGAGGTGAACTTGCTGAATTCCATCCATGACAACTTCCAACAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324710 lncRNA downstream 99487 64783433 ~ 64784851 (-) False G286426
TU324709 lncRNA downstream 99629 64784007 ~ 64784709 (-) True G286426
TU324708 lncRNA downstream 100529 64783433 ~ 64783809 (-) False G286426
TU324570 lncRNA downstream 106401 64777664 ~ 64777937 (-) True G286299
TU324563 lncRNA downstream 114312 64769797 ~ 64770026 (-) True G286292
TU324817 lncRNA upstream 73252 64969235 ~ 64969459 (-) True G286520
TU324820 lncRNA upstream 75275 64971258 ~ 64971597 (-) True G286523
TU324833 lncRNA upstream 82263 64978246 ~ 64978524 (-) True G286536
TU324889 lncRNA upstream 91800 64987783 ~ 64995840 (-) True en1a
TU324897 lncRNA upstream 101245 64997228 ~ 64997456 (-) True G286579
XM_021597667.2 mRNA downstream 1303 64862026 ~ 64883035 (-) False LOC110520386
XM_021597673.2 mRNA downstream 28487 64852503 ~ 64855851 (-) True LOC110520388
XM_036974916.1 mRNA downstream 242773 64485789 ~ 64641565 (-) False LOC110520379
XM_036974917.1 mRNA downstream 242773 64485789 ~ 64641565 (-) False LOC110520379
XM_036974914.1 mRNA downstream 710062 63911999 ~ 64174276 (-) True LOC110520380
XM_021597678.2 mRNA upstream 91770 64987753 ~ 64992151 (-) False en1a
XM_021597676.2 mRNA upstream 91770 64987753 ~ 64992153 (-) False en1a
XM_021597681.2 mRNA upstream 210746 65106729 ~ 65108799 (-) True c1ql2
XM_021597684.2 mRNA upstream 250537 65146520 ~ 65150171 (-) True c3h2orf76
XM_036965070.1 mRNA upstream 277975 65173958 ~ 65182654 (-) False LOC110520397
TU322065 other downstream 2169161 62714575 ~ 62715177 (-) True G284018
TU315276 other downstream 7295155 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 7480763 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 7586576 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312500 other downstream 9472851 55410143 ~ 55411487 (-) True G275250
TU324819 other upstream 73566 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 118276 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 158717 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 158717 65054700 ~ 65075985 (-) True G286638
TU325334 other upstream 339197 65235180 ~ 65235908 (-) True G286953

Expression Profile